phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. …

Fast, sensitive and accurate integration of single-cell data with Harmony

Genome Association Predict Integrate Tools

VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data

PubMed analysis: code and data

Source code for the R package, "dbparser" (i.e. DrugBank Parser)

💊 Molecular informatics toolkit with integration of bioinformatics and cheminformatics tools for drug discovery

A Bioconductor package to retrieve and analyze data from the Human Protein Atlas

Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.

Inference of gene dependency from RNAi screening datasets.

Processing and analysis of proteomics data

co-expressed gene-set enrichment analysis

Resources for Drug Repurposing In Alzheimer's Disease (DRIAD) work

Peptide Correlation analysis

Human Connectome Project Interface with R

Drug Repurposing in Alzheimer's Disease

App for simulation of Patient-based Real-Time Quality Control in Clinical Chemistry

Pathway enrichment of metabolomics data