XACT-seq

Python prequisites

Bio.SeqIO from Biopython
numpy
itertools

R prerequisites

RStudio
tidyverse
parallel
stringdist

Running the codes

All codes should be executed from the .Rmd files from within the codes folder.
Download all the sequencing datasets and place them within the 1-original folder

Run them in the following order.

itc.process.crosslink.Rmd
itc.process.template.Rmd
itc.process.rnaseq.Rmd
itc.combined.data.Rmd