These files are MySQL database dump files for seeding a new instance of the cBioPortal database for mouse. They contain all the necessary background data for a properly functioning cBioPortal website, including cancer types, genes and uniprot-mappings.
The database schema and cBioPortal release follows different numbering cycles since cBioPortal 1.5.0 and database schema 2.1.0. This means that the version numbers won't be identical.
This schema is required for cBioPortal release versions:
- 1.9.0
When using a release version > 1.9.0, a migration step to a new database schema might be required. The migration process is described here.
Schema 2.4.0: SQL file with create table statements
Seed database : seed-cbioportal_mm10_v2.4.0.sql.gz
md5sum 1014ed1f9d72103f2b46e5615aacbc2f
This schema is required for cBioPortal release versions:
- 1.7.1
- 1.7.2
- 1.7.3
- 1.8.0
When using a release version > 1.8.0, a migration step to a new database schema might be required. The migration process is described here.
Schema 2.3.1: SQL file with create table statements for portal release 1.7.3
Seed database: cbioportal-seed SQL (.gz) file
This schema is required for older cBioPortal release versions:
- 1.5.0
- 1.5.1
- 1.5.2
When using this older seed database with a release version > 1.5.2, a migration step to a new database schema is required. The migration process is described here.
Schema 2.1.0: SQL file with create table statements for portal release 1.5.0
Seed database: cbioportal-seed SQL (.gz) file)
Updating the seed database for Datahub is described here.