Read and write layered TIFF ImageSourceData and ImageResources tags

Alignment of spatial genomics data using deep Gaussian processes

Deconvolution of widefield microscopy images and generation of point spread functions

A GTK3 GUI for deconwolf

Orthogonal Oligo Design for Fluorescence In Situ Hybridization (a.k.a. OOD-FISH)

A Python3 Radial Image Analysis Toolkit

ifpd2: a Python3.7+ package to build iFISH probes

iFISH Probe Design: a Python3 package to build iFISH probes.

Spatial Single Cell Analysis in Python

https://www.youtube.com/channel/UC34rW-HtPJulxr5wp2Xa04w?sub_confirmation=1

A fast image processing library with low memory needs.

Python package to trim and extract flags from FASTA and FASTQ files.

Image processing in Python

ilastik-shell, applets, and workflows to string them together.

napari: a fast, interactive, multi-dimensional image viewer for python

Read and write TIFF files

Deprecated: Read and write image data from and to TIFF files.

PSFs In the Full FOV. A software package for modeling the point-spread function (PSF) across the full field of view (FOV). Documentation:

Python Image Sequence: Load video and sequential images in many formats with a simple, consistent interface.

czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html

A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.

An implementation of chunked, compressed, N-dimensional arrays for Python.