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Commits on Oct 23, 2012

• Merge pull request #9 from madprime/201208_update_genetic_input

  tomclegg

  committedOct 23, 2012
  a26153b

Commits on Sep 3, 2012

• Adding Family Tree DNA conversion

  

  Madeleine Price Ball

  committedSep 3, 2012
  bd567ec

Commits on Aug 31, 2012

• Fix bug in csv parsing

  

  Madeleine Price Ball

  committedAug 31, 2012
  0582312

• Go back to old data format names for metadata

  

  Madeleine Price Ball

  committedAug 31, 2012
  5728317

• Allow .csv upload

  

  Madeleine Price Ball

  committedAug 31, 2012
  1aee93a

Commits on Aug 29, 2012

• Add conversion of deCODEme data

  

  Madeleine Price Ball

  committedAug 29, 2012
  5d93119

• More abstraction for genetic data conversion

  

  Madeleine Price Ball

  committedAug 29, 2012
  29c4204

Commits on Aug 26, 2012

• Replace sys.exit() with raise in autozip.py

  

  Madeleine Price Ball

  committedAug 26, 2012
  c8df075

• Standardizing to all use server/utils/autozip.py

  

  Madeleine Price Ball

  committedAug 26, 2012
  c26785f

Commits on Aug 22, 2012

• Fix output of b37 in header (fixes #1121)

  

  Madeleine Price Ball

  committedAug 22, 2012
  f680f76

Commits on Aug 21, 2012

• Abstraction for mapping in gff_getevidence_map.py

  

  Madeleine Price Ball

  committedAug 21, 2012
  d8aef40

• Move fallback quality_scores (fixes #1118)

  

  Madeleine Price Ball

  committedAug 21, 2012
  49b61f8

Commits on Aug 17, 2012

• Accept .zip files for source data upload

  

  Madeleine Price Ball

  committedAug 17, 2012
  55fc2d3

Commits on Aug 7, 2012

• reject submit of empty/bogus dataset_locator

  tomclegg

  committedAug 7, 2012
  2a220e5

• use data tarball on ant

  tomclegg

  committedAug 7, 2012
  748868e

• silence php warnings

  tomclegg

  committedAug 7, 2012
  b272394

Commits on Aug 6, 2012

• fix database error detection

  tomclegg

  committedAug 6, 2012
  d060e81

• add "effective user" name space to submit API

  tomclegg

  committedAug 6, 2012
  226ad56

Commits on Aug 5, 2012

• use whpipeline to process data submitted via API. closes #947 refs #426

  tomclegg

  committedAug 5, 2012
  1b7a510

• (again) suff_eval = False for variants not in GET-Evidence

  tomclegg

  committedAug 5, 2012
  0da069f

• suff_eval = False for variants not in GET-Evidence

  tomclegg

  committedAug 5, 2012
  43d5c2b

• fix (again) crash trying to check suff_eval on variants not in GET-Evidence

  tomclegg

  committedAug 5, 2012
  1985e55

• fix crash trying to check suff_eval on variants not in GET-Evidence

  tomclegg

  committedAug 5, 2012
  6ea69be

• fix download extension

  tomclegg

  committedAug 5, 2012
  eeeb3a4

• add back "download source data" link for data sets stored in warehouse

  tomclegg

  committedAug 5, 2012
  97afc82

Commits on Aug 1, 2012

• Show uploading user's email in "all genomes" admin report

  tomclegg

  committedAug 1, 2012
  67fe2da

Commits on Jul 25, 2012

• fix up python server copyright notices. refs #1024

  tomclegg

  committedJul 25, 2012
  5155e87

• fix up copyright notices. closes #1024

  tomclegg

  committedJul 25, 2012
  214b7e5

• Remove hapmap and 1000g frequencies

  tomclegg

  committedJul 25, 2012
  89fbc81

• fix broken link guide_impact_scores -> guide_impact_score. fixes #1023

  tomclegg

  committedJul 25, 2012
  6a754e0

Commits on Jul 8, 2012

• add article PMID to bionotate history csv

  tomclegg

  committedJul 8, 2012
  de350b5

• fix make target

  tomclegg

  committedJul 8, 2012
  b089051

• squash newlines in xml, change column heading to bionotate_xml

  tomclegg

  committedJul 8, 2012
  557aebb

• add "bionotate edit history" csv download

  tomclegg

  committedJul 8, 2012
  db92b38

Commits on Jun 29, 2012

• fix grep for suff_eval, to accommodate verbose json

  tomclegg

  committedJun 29, 2012
  f8f074d

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