topOnto - An R package for generically enabled ontology enrichment analysis
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Updated
Jun 27, 2017 - R
topOnto - An R package for generically enabled ontology enrichment analysis
Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.
Full results to accompany Zhu and Stephens (2018).
TCR Enrichment Analysis (TEA) Webtool
An R package for multi-dimensional pathway enrichment analysis (legacy repo)
Quick guide to visualize enrichment of genomic signals on targets or regions using EnrichedHeatmap
Enrichment Analysis for Gene Ontology. This version has "enrichment_barplot" function added to the package
Enrichment analysis of Chromosomal Locations with functional biological processes (e.g. Gene Ontology Terms, KEGG Pathways, Transcription Factors), taking into account the TADs that they correspond to.
Curated list of analysis pipelines for biological & clinical interpretation of data-driven findings
R/Shiny package for network-integrated pathway enrichment analysis
Ready-to-use curated genesets for cinaR
Working Demo on GO Enrichment Analysis using topGO, clusterProfiler and Enrichr/enrichR. Visit repo website for HTML output
A standalone interactive application for detecting biological significance on a set of genes
🔎 Web-based Tool for Interacting with FOBI Ontology
Code for representing Gene Ontology Enrichment Analysis as a circular barplot.
Home to the development of the TREND-DB application
📊 An R package of RNA-seq workflow
Reproducible analyses for manuscript "CBEA: Competitive Balances for Taxonomic Enrichment Analysis"
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