creating hybrid-gene phylogenetic trees for diversity analyses
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Updated
Aug 23, 2022 - Python
creating hybrid-gene phylogenetic trees for diversity analyses
AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0
Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes
A spatially explicit trait- and individual-based microbial systems modelling framework
SCGid, a consensus approach to contig filtering and genome prediction from single-cell sequencing libraries
Assembly and phylogentic analysis pipeline for draft genome of a Pestalotiopsis fungi.
Domingo Fermenter software source code
Tool to predict eukaryotic signal peptides. In addition, prediction of toxin and fungi signal peptides is also done.
CATAStrophy predicts filamentous plant pathogen lifestyle characteristics based on their CAZyme composition.
Assemblies, MATA/MATB regions and source data from Peris et al 2022
Fungal Identification Pipeline
Script python permettant de télécharger les séquences de la base de donnée JGI.
GenBank Record downloader for taxonomists
Antimicrobial activity prediction for fungal effector candidates
A small pipeline to analyse marker data into a phylogeny
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