Fast and accurate de novo assembler for long reads
-
Updated
May 10, 2024 - C
Fast and accurate de novo assembler for long reads
PEPPER-Margin-DeepVariant
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
Long read production pipelines
Reference-guided transcript discovery and quantification for long read RNA-Seq data
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
Long-reads Gap-free Chromosome-scale Assembler
Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
⛓ Long Interval Nucleotide K-mer Scaffolder
A versatile compressor of third generation sequencing reads.
Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
SneakySnake:snake: is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. It greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short and long reads. Described in the Bioinformatics (2020) by Alser et al. https://arxiv.o…
Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.
Predict plasmids from uncorrected long read data
Tandem repeat expansion detection or genotyping from long-read alignments
A fast tool for hybrid genome assembly of long and short reads
Add a description, image, and links to the long-reads topic page so that developers can more easily learn about it.
To associate your repository with the long-reads topic, visit your repo's landing page and select "manage topics."