A command-line tool for downloading and managing NCBI genome data
-
Updated
Sep 13, 2024 - Rust
A command-line tool for downloading and managing NCBI genome data
LLM model which summarizes academic article into an abstract paragraph
tair id to pubmed links for articls, genes, annotations, locus tag
explore sra databases and sequence retrieval
This Python script retrieve all children organism under an ancestor in NCBI taxonomy.
Gene download from NCBI database, sequence alignment and clusterization, realization of different bioinformatics algorithms within ITMO 4 sem course
I developed the "National Centre for Biotechnology Information" project to create a comprehensive and user-friendly platform for accessing and exploring a wealth of biotechnological information. Utilizing HTML, CSS, and Bootstrap, I designed a responsive web application that ensures seamless accessibility across various devices and screen sizes.
Genome Metadata Visualizer is a series of scripts written to process and visualise genome metadata after it is pulled from NCBI using the dataset and dataformat command line tools.
FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
A tool to fetch Protein sequences of different subtypes of Influenza A virus from the NCBI database and create a local database to store the sequences for further library preparation used for Phage-Immunoprecipitation Sequencing.
Assign taxonomy with blast, can be used for qiime
Julia package to handle the NCBI Taxonomy database.
Find and retrieve biological data and its metadata from NCBI
Pull Sequence Read Archive (SRA) data into AnVIL
How to download genomes using the accession number
Bio Python Project using getopt library in python and engaging with the command line prompt.
Identifying viruses as an anomaly
Deep learning methods for feature selection in gene expression autism data.
Django app for generating frequency portraits of gene sequences
Add a description, image, and links to the ncbi-database topic page so that developers can more easily learn about it.
To associate your repository with the ncbi-database topic, visit your repo's landing page and select "manage topics."