Analysis of neutrophil metabolic activity during metastasis using single-cell RNASeq and COnstraint-Based Reconstruction and Analysis.
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Updated
Mar 12, 2021 - HTML
Analysis of neutrophil metabolic activity during metastasis using single-cell RNASeq and COnstraint-Based Reconstruction and Analysis.
TRIAGE is provided here as an R package comprised of three tools: 1) TRIAGEgene, 2) TRIAGEcluster, and 3) TRIAGEparser, along with a set of functions that streamlines creation of publication-ready figures and facilitates smoother data analysis.
diabetes
scripts for scRNA-Seq/scATAC-Seq
Analysis of Single-Cell RNA data from SRR14294834 in peripheral blood mononuclear cells in severe asthma
Prediction of surface protein expression from mRNA expression using a regression auto-encoder neural network.
Package for analyzing batch effects in single cell RNA sequencing (scRNA-seq) analysis and predicting their impact on downstream analysis.
Analyzing batch effects in single cell RNA sequencing (scRNA-seq) analysis and predicting their impact on downstream analysis.
Documentation analysis and manuscript figures
CD24 CART single cell analysis
seuratOnline
Sample size estimation for single cell studies
Code and data for TRL4 signaling paper.
Experimental app for visualizing scDesign estimates.
The study of how cancer cells gain stemness.
Expectation-Maximization-based clustering algorithm to identify groups defined by biological variates as clusters in single-cell transcriptomic data.
Nek2 single cell analysis
This project employs Scanpy in Python for analyzing spatial transcriptomics data, encompassing preprocessing, quality control, clustering, and marker gene identification, resulting in informative visualizations to reveal gene expression patterns and cellular interactions within tissue samples.
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