The ENCODE-DCC demo workflow in Snakemake (under development)
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Updated
Sep 1, 2019 - HTML
The ENCODE-DCC demo workflow in Snakemake (under development)
STAR + edgeR/DESeq2/limma-voom + GSEA RNA-seq gene expression analysis workflow
imputation workflow for array data using shapeit2 and impute2
Imputation workflow for low coverage whole genome sequencing data
A snakemake based workflow for ChIPSeq data analysis
Ribofilio is a python tool to estimate ribosomes drop off rate.
Snakemake workflow for preprocessing fast files
🙋 My github profile
Origin mechanisms of SAARs – use case of L-SAARs in signal peptides among higher Eukaryotes
Infer network from count data within Snakemake using a sparse Poisson lognormal model (PLNnetwork)
A Snakemake workflow assembling bacterial genomes according to the standard operating procedure in the Clavel Lab
Pipeline to analyse ChIP-Rx data, i.e ChIP-Seq with reference exogenous genome spike-in normalization
multiple imputation for association studies
Detect replication slippage variants at microsatellite regions
Bulk RNA-seq analytical pipeline, including using Snakemake to run main steps such as Kallisto read mapping, QC, Principal Component Analysis (PCA), and other downstream analysis.
The evaluation of MERFISHtools and the underyling model as published in the corresponding article.
Make energy model workflows easy as 🥧!
Snakemake workflow for Salmon quantification and FastQC quality controls
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