This is the development home of the workflow management system Snakemake. For general information, see
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Updated
Sep 25, 2024 - HTML
This is the development home of the workflow management system Snakemake. For general information, see
A snakemake workflow for WGS-based tuberculosis transmission analysis
Tutorial with snakemake and Scientific Filesystem
A pipeline for study of genetic instability of tumors.
Rules to run Roary or PanPhlAn to build pangenome using Snakemake
RNA-Seq analysis for "Mitochondrial DNA Variation Dictates Expressivity and Progression of Nuclear DNA Mutations Causing Cardiomyopathy"
snakemake pipeline for gatk running on binder
Bioinformatic analyses on the evolution of reproductive isolation between locally adapted populations of the rough periwinkle
A simple Snakemake workflow to perform network analyses using the Python Geneset Network Analysis (PyGNA) package.
Final project submission for IS477 course at University of Illinois Urbana-Champaign. Utilized Snakemake for efficient creation of research objects, applying semester's knowledge on data curation, management, and reproducibility.
An enhanced template structure for Snakemake
Easy to use Snakemake metagenomic pipeline that covers a) read-based analysis b) contig based analysis and c) MAG assembly and annotation using a broad set of ready to use and included public databases and annotators
An open-source pipeline to discover universal epitopes for vaccines.
Snakemake workshop for RezBaz2020.
Estimación de turbidez en el agua a la entrada de la planta de tratamiento de SAMEEP, utilizando los productos Sentinel-2 MSI L2A y aprendizaje automático.
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