TCGAbiolinks
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Updated
Aug 8, 2024 - R
TCGAbiolinks
R data package for pre-compiled somatic mutations from TCGA cohorts (from Broad Firehose and TCGA MC3 Project)
Explore the cancer relevance of your gene list
TCGAbiolinksGUI code development for R/Bioconductor submission http://tcgabiolinks.fmrp.usp.br:3838/
Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data
Bioinformatics Pipeline
GNU Make-driven workflow to download TCGA data via the TCGAbiolinks package
Computational approach to identify Survival associated Pairwise Gene Expression states.
a neural network-based feature selection algorithm for next-generation sequencing data
Examples on processing and working with TCGA mutation and RNA-Seq data
A Community Curated Immune Resource Database in R format
An R package to access, manage and visualize regulome (microRNA/transcription factors)-gene correlations in cancer
Genomic data from TCGA ready to be used (organized per tissue type and in matrix form)
Genomic Data Commons Query
Scripts to manage biotab files from TCGA.
Supplementary R scripts for the manuscript "Disrupting PGE2/EP3 signaling in cancer-associated fibroblasts limits mammary carcinoma growth but promotes metastasis"
Build the database file for cRegulome package
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