diff --git a/scripts/sf_coreTree_json.py b/scripts/sf_coreTree_json.py index e69863f..6832db6 100644 --- a/scripts/sf_coreTree_json.py +++ b/scripts/sf_coreTree_json.py @@ -263,9 +263,9 @@ def json_parser( path, folders_dict, fpaths_dict, meta_info_file_path, os.chdir(output_path) os.system('mv coreGenomeTree.json strainMetainfo.json '+main_data_path+'metaConfiguration.js '+vis_json_path) + os.system('cp strain_tree.nwk '+vis_json_path+'/strain_tree.nwk') os.system('mv *_tree.json *.nwk '+vis_cluster_path) os.system('mv *_aln*.fa '+vis_cluster_path) - os.system('cp strain_tree.nwk '+vis_json_path+'/strain_tree.nwk') os.system('mv *patterns.json '+vis_cluster_path) os.system('mv '+clustering_path+'allclusters_final.tsv'+' '+main_data_path)