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minor clean up changes
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etetteh committed Sep 18, 2021
1 parent 85ba2f5 commit cbfe01c
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Showing 2 changed files with 2 additions and 11 deletions.
5 changes: 2 additions & 3 deletions chest.py
Original file line number Diff line number Diff line change
Expand Up @@ -33,7 +33,6 @@
parser = argparse.ArgumentParser(description='X-RAY Pathology Detection')
parser.add_argument('--seed', type=int, default=0, help='')
parser.add_argument('--dataset_dir', type=str, default="./data/")
parser.add_argument('--ssl_ckpt_dir', type=str, default="")
parser.add_argument('--lr', type=float, default=0.001, help='')
parser.add_argument('--weight_decay', type=float, default=1e-5, help='')

Expand Down Expand Up @@ -217,15 +216,15 @@ def tqdm(*args, **kwargs):
if train_loader.index(dataloader) == train_datas.index(data):
tr_l = DataLoader(xrv.datasets.SubsetDataset(dataset=data, idxs=range(cfg.batch_size*cfg.num_batches)),
batch_size=cfg.batch_size,
shuffle=True,
shuffle=cfg.shuffle,
num_workers=cfg.num_workers,
pin_memory=True,
drop_last=True)
dataloader.insert(0, tr_l)

valid_loader = DataLoader(valid_data,
batch_size=cfg.batch_size,
shuffle=True,
shuffle=cfg.shuffle,
num_workers=cfg.num_workers,
pin_memory=True,
drop_last=True)
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8 changes: 0 additions & 8 deletions xrv_test.py
Original file line number Diff line number Diff line change
Expand Up @@ -68,14 +68,6 @@ def tqdm(*args, **kwargs):

transforms = torchvision.transforms.Compose([xrv.datasets.XRayCenterCrop(), xrv.datasets.XRayResizer(112)])

#xrv.datasets.default_pathologies = [
# 'Cardiomegaly',
# 'Effusion',
# 'Edema',
# 'Consolidation',
# ]


if "nih" in cfg.dataset_name:
### Load NIH Dataset ###
NIH_dataset = xrv.datasets.NIH_Dataset(
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