a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

ilastik-shell, applets, and workflows to string them together.

A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.

Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.

Batch execution of CellProfiler analyses using Nextflow

A nextflow pipeline to run CellProfiler pipelines on raw images and process output

A CellProfiler plugin for running on an HPC cluster

Prepare data for cellprofiler

An open-source application for biological image analysis

A large collection of Khmer language resources. Khmer is a language used by Cambodia.

StarDist - Object Detection with Star-convex Shapes