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A collection of Dev Container Features managed by Dev Container spec maintainers. See https://github.com/devcontainers/feature-starter to publish your own
Python library for RO-Crate
strip output from Jupyter and IPython notebooks
Codespaces but open-source, client-only and unopinionated: Works with any IDE and lets you use any cloud, kubernetes or just localhost docker.
upload big files to Zenodo using cURL, jq and bash
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Scalable Python DS & ML, in an API compatible & lightning fast way.
🐶 Automated code review tool integrated with any code analysis tools regardless of programming language
A GitHub action to create or update an issue or pull request comment
😎 Awesome lists about all kinds of interesting topics
A curated list of awesome actions to use on GitHub
Low-code framework for building custom LLMs, neural networks, and other AI models
✨ Recognize all contributors, not just the ones who push code ✨
A Git extension for JupyterLab
🗺️ MAPP is a computational method which enables identification of binding motifs for RNA-binding proteins that shape pre-mRNA processing under specific conditions.
Collection of bioinformatics training materials
A tool to find sequencing data and metadata from public databases.
Explainability for Random Forest Models.
Applied Computational Genomics Course at UU: Spring 2020
📚 A curated list of awesome programming books (Algorithms and data structures, Artificial intelligence, Software Architecture, Human–computer interaction, Operating Systems, Database Systems, IT Se…
Material for the [BC]2 2019 workshop "Introduction to Machine Learning: opportunities for advancing omics data analysis"
Fast, flexible and easy to use probabilistic modelling in Python.
An extremely long review of R.