Molecular epidemiology and transmission dynamics of CoVID-19 in Houston Texas

CDC contract 75D30121C10133

Table of Contents

1. Task 1: Develop an analytical pipeline for SARS-CoV-2 samples to rapidly share molecular epidemiology inferences
   • Sequencing
   • Project specific instance of NextStrain
2. Task 2: Integrate phylogenetic and epidemic network modeling to identify transmission clusters
3. Task 3: Develop statistical phylodynamic models
   • Bayesian statistics and modeling
   • Tip-trait association test
4. Task 4: Phylodynamic modeling of co-circulating respiratory pathogens
5. Extends
6. Contact
7. Acknowledgments

Task 1: Develop an analytical pipeline for SARS-CoV-2 samples to rapidly share molecular epidemiology inferences

Sequencing

Project specific instance of NextStrain

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Task 2: Integrate phylogenetic and epidemic network modeling to identify transmission clusters

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Task 3: Develop statistical phylodynamic models

Bayesian statistics and modeling

Tip-trait association test

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Task 4: Phylodynamic modeling of co-circulating respiratory pathogens

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Extends

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Contact

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Acknowledgments

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