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Nagarajan Lab

Git repository for Niranjan Nagarajan's Group

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  1. lofreq lofreq Public

    LoFreq Star: Sensitive variant calling from sequencing data

    C 97 30

  2. OPERA-MS OPERA-MS Public

    OPERA-MS - Hybrid Metagenomic Assembler

    C++ 88 17

  3. CaDRReS CaDRReS Public

    Cancer Drug Response prediction using a Recommender System

    Python 41 17

  4. GERMS_16S_pipeline GERMS_16S_pipeline Public

    Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences

    Python 14 7

  5. INC-Seq INC-Seq Public

    INC-Seq: Accurate single molecule reads using nanopore sequencing

    Python 13 4

  6. CaDRReS-Sc CaDRReS-Sc Public

    CaDRReS-Sc is a framework for analyzing drug response heterogeneity based on single-cell RNA-seq data

    Jupyter Notebook 12 3

Repositories

Showing 10 of 41 repositories
  • OPERA-MS Public

    OPERA-MS - Hybrid Metagenomic Assembler

    CSB5/OPERA-MS’s past year of commit activity
    C++ 88 17 36 0 Updated Jul 3, 2024
  • SG90 Public
    CSB5/SG90’s past year of commit activity
    HTML 0 0 0 0 Updated Jun 20, 2024
  • food_centre_microbiome Public

    City-wide metagenomic surveillance of food centres reveals location-specific microbial signatures and enrichment of antibiotic resistance genes

    CSB5/food_centre_microbiome’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 5, 2024
  • AD-caregiver-manuscript Public

    Files and scripts to generate figures for the manuscript titled "Shared signatures and divergence in skin microbiomes of children with atopic dermatitis and their adult caregivers"

    CSB5/AD-caregiver-manuscript’s past year of commit activity
    Assembly 0 0 0 0 Updated Sep 12, 2023
  • Candida_auris_CladeVI Public

    WGS analysis for Candida auris

    CSB5/Candida_auris_CladeVI’s past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated Jul 31, 2023
  • CaDRReS Public

    Cancer Drug Response prediction using a Recommender System

    CSB5/CaDRReS’s past year of commit activity
    Python 41 GPL-3.0 17 3 2 Updated Jul 6, 2023
  • SPMP Public

    Singapore Platinum Metagenomes Project

    CSB5/SPMP’s past year of commit activity
    Jupyter Notebook 3 MIT 3 0 0 Updated Mar 13, 2023
  • CSB5/shotgunmetagenomics-nf’s past year of commit activity
    Python 3 MIT 5 0 0 Updated Nov 11, 2022
  • MetageNN Public

    MetageNN is a proof of concept neural network used to obtain a memory-efficient taxonomic classifier robust to sequencing errors and missing genomes

    CSB5/MetageNN’s past year of commit activity
    Python 5 0 0 0 Updated Sep 26, 2022
  • TUGDA Public

    TUGDA is a novel multi-task unsupervised domain adaptation method that leverages transfer learning from tasks/domains in a unified framework.

    CSB5/TUGDA’s past year of commit activity
    Jupyter Notebook 6 3 0 0 Updated Sep 26, 2022

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