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minority4u committed Dec 16, 2020
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Expand Up @@ -11,7 +11,7 @@ The following gif shows exemplary the learning progress of this model. Each fram
- The Deep Learning models/layers are build with TF 2.X.
- Unfortunately we are not allowed to make the data public accessible.
- The corresponding paper is currently under review for the special issue call @ TMI (cf. <a target="_blank" href="https://www.embs.org/wp-content/uploads/2020/04/Special_Issue_CFP_DL4MI.pdf">TMI Special Issue Call</a>)
- An setup instruction is given here: [Setup hints](##Setup instructions (tested with OSX and Ubuntu))
- An setup instruction is given here: [Install requirements](https://github.com/Cardio-AI/3d-mri-domain-adaptation#setup-instructions-tested-with-osx-and-ubuntu)



Expand All @@ -35,6 +35,21 @@ Sven Koehler, Tarique Hussain, Zach Blair, Tyler Huffaker, Florian Ritzmann, Ani
Thomas Pickardt, Samir Sarikouch, Heiner Latus, Gerald Greil, Ivo Wolf, Sandy Engelhardt
```

- Working group ([Link to AG-homepage](https://www.klinikum.uni-heidelberg.de/chirurgische-klinik-zentrum/herzchirurgie/forschung/ag-artificial-intelligence-in-cardiovascular-medicine)):
```
AG Artificial Intelligence in Cardiovascular Medicine (Universitaetsklinikum Heidelberg)
```

- Cooperation with ([Informatics for life](https://informatics4life.org/)):
```
Klaus Tschira Foundation
```

- Further cooperation partners:
[German Competence network for Congenital heart defects](https://www.kompetenznetz-ahf.de/en/about-us/competence-network/)
[Universitaetsklinik Heidelberg](https://www.klinikum.uni-heidelberg.de/chirurgische-klinik-zentrum/herzchirurgie/forschung/ag-artificial-intelligence-in-cardiovascular-medicine)
[UT Southwestern Medical Center](https://www.utsouthwestern.edu/education/medical-school/departments/pediatrics/divisions/cardiology/)


## Repository overview:

Expand Down Expand Up @@ -93,6 +108,12 @@ Use the Notebooks to interact (train, predict or evaluate) with the python funct
   ├── utils <- Python modules - Metrics, losses, prediction, evaluation code, TF-callbacks and io-utils
   └── visualization <- Python modules - Plot functions for the evaluation and data description

### Dataset
For this work a multi-centric heterogeneous cine-SSFPs CMR TOF data set from the German Competence Network ([link](https://www.kompetenznetz-ahf.de/en/about-us/competence-network/))
for Congenital Heart Defects was used (study identifier: NCT00266188, title: Non-invasive Imaging andExercise Tolerance Tests in Post-repair Tetralogy of Fallot -Intervention and Course in Patients Over 8 Years Old).
This TOF dataset constitutes one of the largest compiled data set of this pathology to date.
The data was acquired at 14 different sites between 2005-2008 on 1.5T and 3T machines;
further descriptions can be found in [link to study](https://www.ahajournals.org/doi/epub/10.1161/CIRCIMAGING.111.963637).

## Setup instructions (tested with OSX and Ubuntu)

Expand Down

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