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@DeepMicroscopy

DeepMicroscopy - Generating Deep Insights from Deep Learning in Microscopy

This is our central home for all our digital pathology projects, focusing on deep learning.

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  1. SlideRunner SlideRunner Public

    SlideRunner is a tool for massive cell annotations in whole slide images

    Python 74 10

  2. Exact Exact Public

    An open source online platform for collaborative image labeling of almost everything

    JavaScript 54 16

  3. MITOS_WSI_CCMCT MITOS_WSI_CCMCT Public

    Large-Scale Canine Cutaneous Mast Cell Tumor Dataset for Mitotic Figure Assessment on Whole Slide Images

    Jupyter Notebook 28 10

  4. MITOS_WSI_CMC MITOS_WSI_CMC Public

    Large-Scale Canine Mammary Carcinoma Dataset for Mitotic Figure Assessment on Whole Slide Images

    Jupyter Notebook 21 9

  5. MIDOG MIDOG Public

    MItosis DOmain Generalization Challenge 2021/2022

    Python 15 5

  6. TUPAC16_AlternativeLabels TUPAC16_AlternativeLabels Public

    Alternative training set for the TUPAC16 auxiliary mitotic figure data set

    Jupyter Notebook 12 4

Repositories

Showing 10 of 33 repositories
  • Exact Public

    An open source online platform for collaborative image labeling of almost everything

    DeepMicroscopy/Exact’s past year of commit activity
    JavaScript 54 MIT 16 11 0 Updated Jun 29, 2024
  • Prototype-sampling Public
    DeepMicroscopy/Prototype-sampling’s past year of commit activity
    Python 0 0 0 0 Updated Jun 25, 2024
  • CD3-Detection Public
    DeepMicroscopy/CD3-Detection’s past year of commit activity
    Python 0 0 0 0 Updated Jun 5, 2024
  • EXACT-QueueRunner Public

    Repository for EXACT QueueRunner, a service that executes processing for jobs available on EXACT.

    DeepMicroscopy/EXACT-QueueRunner’s past year of commit activity
    Python 1 MIT 2 0 0 Updated May 31, 2024
  • MIDOGpp Public

    A large, multi-domain mitotic Figure Dataset

    DeepMicroscopy/MIDOGpp’s past year of commit activity
    Python 9 MIT 6 0 0 Updated May 22, 2024
  • Histopathology-Datasets Public Forked from maduc7/Histopathology-Datasets

    Ressources of histopathology datasets

    DeepMicroscopy/Histopathology-Datasets’s past year of commit activity
    0 29 0 0 Updated Apr 29, 2024
  • MITOS_WSI_CCMCT Public

    Large-Scale Canine Cutaneous Mast Cell Tumor Dataset for Mitotic Figure Assessment on Whole Slide Images

    DeepMicroscopy/MITOS_WSI_CCMCT’s past year of commit activity
    Jupyter Notebook 28 10 0 0 Updated Apr 29, 2024
  • QuiltCleaner Public

    Automatic cleaning of the QUILT-1M pathology dataset

    DeepMicroscopy/QuiltCleaner’s past year of commit activity
    Jupyter Notebook 2 MIT 0 1 (1 issue needs help) 0 Updated Apr 28, 2024
  • nnUNet-for-pathology Public Forked from DIAGNijmegen/nnUNet-for-pathology

    Adapted nnUNet framework with additional features to suit the requirements for pathology applications

    DeepMicroscopy/nnUNet-for-pathology’s past year of commit activity
    Python 0 Apache-2.0 1,637 0 0 Updated Apr 8, 2024
  • AIRoV Public
    DeepMicroscopy/AIRoV’s past year of commit activity
    JavaScript 0 0 0 0 Updated Mar 18, 2024
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