replace baseDir with projectDir

EBIvariation · Oct 2, 2023 · a891e6f · a891e6f
1 parent bdb50ba
commit a891e6f
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/pipelines/annotation_pipeline.nf b/pipelines/annotation_pipeline.nf
@@ -30,7 +30,7 @@ if (!params.output_dir) {
     exit 1, helpMessage()
 }
 batchRoot = params.output_dir
-codeRoot = "${baseDir}/.."
+codeRoot = "${projectDir}/.."
 
 
 /*

diff --git a/pipelines/export_curation_spreadsheet.nf b/pipelines/export_curation_spreadsheet.nf
@@ -28,7 +28,7 @@ if (!params.curation_root or !params.input_csv) {
     exit 1, helpMessage()
 }
 curationRoot = params.curation_root
-codeRoot = "${baseDir}/.."
+codeRoot = "${projectDir}/.."
 
 
 /*

diff --git a/pipelines/generate_curation_spreadsheet.nf b/pipelines/generate_curation_spreadsheet.nf
@@ -32,7 +32,7 @@ if (!params.curation_root) {
     exit 1, helpMessage()
 }
 curationRoot = params.curation_root
-codeRoot = "${baseDir}/.."
+codeRoot = "${projectDir}/.."
 
 
 /*