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New updates on MEGANv2.1 #2588
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New updates on MEGANv2.1 #2588
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Thanks for opening this PR @HuiWangWanderInGitHub. We'll start reviewing this PR, but a quick look seems like this should be straightforward to implement. Directions for this are posted on the wiki @olyson, can you help with this? |
Purely samantic question, can we call this PR MEGANv2.2, or is this confusing with broader MEGAN documentation? Also @lkemmons, can you help clarify the prioritization of this PR in relation to the science code freeze (July 31 deadline) for cam-chem? |
There is a more condensed version of how to update the documentation here: https://docs.google.com/document/d/1aLlu6C6DJiiO2T21qnj54WFCYuSdGw9F/edit Once you've issued a PR for the new documentation and verified the documentation builds successfully, we can take it from there. |
For naming - Alex recommends calling the updated version 'MEGAN-CLM6' (or
whatever the appropriate label is for the version of CLM/CTSM that it ends
up in). Because the stand-alone MEGAN has features that will never be
implemented in CLM, it is not really appropriate to try to use the v2.x and
v3.x labels here.
I will be happy to help verify results in CAM-chem with these updates, to
work towards getting this in CESM3, and hope that will be possible.
…On Mon, Jun 10, 2024 at 10:03 AM will wieder ***@***.***> wrote:
Purely samantic question, can we call this PR MEGANv2.2, or is this
confusing with broader MEGAN documentation?
Also @lkemmons <https://github.com/lkemmons>, can you help clarify the
prioritization of this PR in relation to the science code freeze (July 31
deadline) for cam-chem?
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Bring tmp-branch to master Bring in changes that came in on the tmp-240620 branch to master now that cesm3_0_beta01 has been made. The changes are documented in tags and the ChangeLog but include the following tags: tmp-240620.n03.ctsm5.2.007 samrabin -- upland hillslope column fsat values to zero tmp-240620.n02.ctsm5.2.007 erik ------ Another update of git-fleximod tmp-240620.n01.ctsm5.2.007 slevis ---- Merge b4b-dev
@HuiWangWanderInGitHub
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Large number of tests differ from the baseline (see /glade/derecho/scratch/slevis/tests_0706-132231de).
The former has diffs in FATES variables (clm file) and in lndImp variables (cpl file). UPDATE 1: Same result on izumi with UPDATE 2: I tried the 3 failing tests in vanilla ctsm5.2.008: UPDATE 3: I backed out my last commit and repeated the 3 tests: |
This reverts commit d940ee0 because answers were changing from the baseline in tests ERS_D_Ld15.f45_f45_mg37.I2000Clm50FatesRs.derecho_intel.clm-FatesColdTwoStream ERS_D_Ld15.f45_f45_mg37.I2000Clm50FatesRs.izumi_nag.clm-FatesColdTwoStream
Description of changes
We added new features to MEGANv2.1 for simulating isoprene emissions based on three recent studies conducted at the BAI lab in the University of California, Irvine. The first one is about the drought impact on isoprene (Wang et al., 2022). The second study investigates the effect of temperature history on the emission factors of boreal broadleaf deciduous shrubs (Wang et al., 2024a). The third study explores a different temperature response curve for C3 Arctic grass (Wang et al., 2024b, under press). These changes improved the model's representation of isoprene emissions during drought and in high-latitude ecosystems.
This work is related to issue #1323 and is based on the old MEGANv2.1 framework, but incorporates new scientific insights.
Specific notes
We modified the impact of drought based on the water stress function (β) in the CLM model. We adopted equation (11) from Wang et al., (2022) as:
, where a1 (=-7.45) and b1(=3.26) are empirical parameters. The function “get_gamma_SM” is modified to simulate the change of substrate supply under the water stress.
Second and third modifications are for the high-latitude isoprene emitters including boreal broadleaf deciduous shrubs (BBDS) and C3 Arctic grass (C3AG). These results come from the Biogenic Emission and Aerosol Response on the North Slope (BEAR-oNS) project. These modifications are implemented in “get_gamma_T” function in the code.
For the BBDS, we included the adaptation of isoprene emission factors to the mean temperature of the previous day with the quation as:
, where T24 (K) denotes the mean air temperature of the preceding day (Wang et al., 2024a).
For the C3AG, we adopted a dynamic temperature response curve adapted to the record of growing temperature as:
. CC3AG is the activation energy for the isoprene temperature response of C3AG and changes with the mean air temperature of the preceding 10 days (T240) as:
.
The impact of T240 on isoprene emission factor of C3AG is as:
.
Any User Interface Changes (namelist or namelist defaults changes)?
NO.
Does this create a need to change or add documentation? Did you do so?
I could provide the modification to the scientific document for these changes after they have been added.
Testing performed, if any:
I tested the code on Derecho with the I2000Clm50BgcCrop compsets, and it ran well. The scientific impact of the code for isoprene flux estimations can be found in the corresponding references.
Reference
Wang, H., Lu, X., Seco, R., Stavrakou, T., Karl, T., Jiang, X., et al. (2022). Modeling isoprene emission response to drought and heatwaves within MEGAN using evapotranspiration data and by coupling with the community land model. Journal of Advances in Modeling Earth Systems, 14, e2022MS003174. https://doi.org/10.1029/2022MS003174
Wang, H., Welch, A. M., Nagalingam, S., Leong, C., Kittitananuvong, P., Barsanti, K. C., et al. (2024a). Arctic heatwaves could significantly influence the isoprene emissions from shrubs. Geophysical Research Letters, 51, e2023GL107599. https://doi.org/10.1029/2023GL107599
Wang, H., Welch, A. M., Nagalingam, S., Leong, C., Czimczik, C., Tang, J., et al. (2024b): High temperature sensitivity of Arctic isoprene emissions explained by sedges (accepted by Nature Communications, in press).