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removed dangling ]; move "Edit this ontology" to end and add info #228

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May 17, 2022
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removed dangling ]; move "Edit this ontology" to end and add info #228

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18 changes: 8 additions & 10 deletions README.md
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Original file line number Diff line number Diff line change
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[![Build Status](https://travis-ci.org/EnvironmentOntology/environmental-exposure-ontology.svg?branch=master)](https://travis-ci.org/EnvironmentOntology/environmental-exposure-ontology)
[![DOI](https://zenodo.org/badge/13996/EnvironmentOntology/environmental-exposure-ontology.svg)](https://zenodo.org/badge/latestdoi/13996/EnvironmentOntology/environmental-exposure-ontology)

[![ecto_logo](https://github.com/jmcmurry/closed-illustrations/blob/master/logos/ecto-logos/ecto-logo_black-stacked.png)

## Edit this ontology!

TBD
[![logo](https://github.com/jmcmurry/closed-illustrations/blob/master/logos/ecto-logos/ecto-logo_black-stacked.png)](https://github.com/jmcmurry/closed-illustrations/blob/master/logos/ecto-logos/ecto-logo_black-stacked.png)


## Environmental conditions, treatments and exposures ontology (ECTO)
Expand Down Expand Up @@ -38,7 +34,7 @@ There is no public browser yet. Use one of the following files:
* [subsets/ecto-basic.obo](subsets/ecto-basic.obo) - for OBO-Edit users
* [ecto.owl](ecto.owl) - open in Protege5

Note to open the OWL in Protege you will need to check out the repo so
Note: to open the OWL in Protege you will need to check out the repo so
that the catalog can be used.

### Relationships to other ontologies
Expand Down Expand Up @@ -90,7 +86,7 @@ The proposed ID space is very tentative
### Modeling

The model we are using is aligned with the environmental conditions
model in PhenoPackets. We attempt to follow ExO where possible.
model in Phenopackets. We attempt to follow ExO where possible.

We treat exposures as events; in ontological terms, they are types of
`occurrents`. Specifically, they are interactions between a `receptor`
Expand All @@ -115,8 +111,8 @@ datamodel.

### Annotation Guide

Broadly speaking, this ontology is designed to support both pre and
post composed use cases.
Broadly speaking, this ontology is designed to support both pre- and
post-composed use cases.

With the pre-composed approach, the curator uses a "ready-made" ECTO
class expressing the combination of values required for different
Expand Down Expand Up @@ -147,6 +143,8 @@ instructions on how to edit, maintain or release the ontology.

See [src/mappings](src/mappings) for an exploration of merging multiple exposure ontologies using kboom

The intent is not to use this ontology: rather to help gap fill and understand what is out there.
The intent is not to make a usable ontology, but rather to help gap fill and understand what is out there.

## Edit this ontology!

We welcome suggestions from the community for new terms or changes to existing terms! Please create an issue using our [issue tracker](https://github.com/EnvironmentOntology/environmental-exposure-ontology/issues).