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Update uberon mappings #1346

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merged 18 commits into from
Feb 10, 2022
Merged

Update uberon mappings #1346

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8177680
Remap 'anatomical group' to Uberon 'disconnected anatomical group'.
gouttegd Dec 14, 2021
6880963
Map 'gonadal sheath epithelium' to Uberon's 'gonadal sheath'.
gouttegd Dec 14, 2021
4a9780c
Remove mapping with Uberon's "ganglion".
gouttegd Dec 16, 2021
58e13a2
Remove comment about cuboidal/columnar epithelium mapping.
gouttegd Dec 17, 2021
6636bf7
Fix 'larval ventral nerve cord mapping'.
gouttegd Dec 17, 2021
b9bd718
Update mapping of 'circulatory system'.
gouttegd Dec 17, 2021
9c0022f
Remove mapping of 'symmetrical commissure'.
gouttegd Dec 17, 2021
d234b54
Fix mapping of 'adult anus'.
gouttegd Dec 17, 2021
395fd64
Fix mappings for muscle cells.
gouttegd Dec 17, 2021
9971aeb
Fix mapping of 'ventral neurectoderm'.
gouttegd Dec 17, 2021
8f7992a
Remove comment about 'exocuticle' mapping.
gouttegd Dec 17, 2021
95935a3
Fix mapping of 'neuromere'.
gouttegd Dec 17, 2021
4ec78dd
Remove mapping of testis sheath.
gouttegd Dec 17, 2021
4118a15
Remove mapping of 'somatic muscle'.
gouttegd Dec 17, 2021
c4cba28
Fix heart-related mappings.
gouttegd Dec 17, 2021
a33d4b0
Remove two more dubious mappings.
gouttegd Feb 7, 2022
a86c40a
Update mappings for `trachea` and `adult dorsal trunk`.
gouttegd Feb 8, 2022
039f545
Re-generate the mappings component.
gouttegd Feb 10, 2022
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Fix mapping of 'adult anus'. 
Use stage-neutral term 'anus' to map to Uberon's 'anus'.
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@gouttegd
gouttegd committed Dec 20, 2021
commit d234b54ac1de8a0c0c03c7910644e1a79a89e61b
2 changes: 1 addition & 1 deletion src/ontology/mappings.tsv
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Expand Up @@ -139,7 +139,7 @@ FBbt:00005801 UBERON:0001058 exact mushroom body
FBbt:00005802 UBERON:0001059 exact pars intercerebralis
FBbt:10000000 UBERON:0001062 exact anatomical entity
FBbt:00003525 UBERON:0001135 exact adult visceral muscle Source term should be ‘visceral muscle’ (FBbt:00005070)
FBbt:00003148 UBERON:0001245 exact adult anus Source term should be ‘anus’ (FBbt:00047153)
FBbt:00047153 UBERON:0001245 exact anus
FBbt:00003125 UBERON:0001555 exact alimentary canal
FBbt:00004208 UBERON:0002050 exact developing embryonic structure
FBbt:00005158 UBERON:0002268 exact olfactory sensory organ
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