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Pull requests list

clean up metricgatherer.cpp in preparation for adding UmiMetricGatherer
#113 by fredlas was closed Nov 13, 2022 Loading…
Fastq slideseq sample
#111 by khajoue2 was merged Oct 27, 2022 Loading…
1
added a build script for the docker
#109 by khajoue2 was merged Sep 30, 2022 Loading…
1
Sampling fastq for slideseq data
#108 by khajoue2 was merged Sep 30, 2022 Loading…
2
Stop truncating avg_cell_barcode_qual to integer
#107 by fredlas was merged Sep 16, 2022 Loading…
Updated Makefile and Dockerfile
#106 by khajoue2 was closed Sep 6, 2022 Loading…
Fixes to compile sctools without patches
#105 by khajoue2 was merged Sep 6, 2022 Loading…
3
add --mitochondrial-gene-names-filename option to TagSort
#104 by fredlas was merged Aug 30, 2022 Loading…
Overhaul concurrency and memory management in htslib_tagsort.cpp
#103 by fredlas was merged Aug 30, 2022 Loading…
1
Overhaul and consolidate fastqprocess.cpp and fastq_slideseq.cpp
#102 by fredlas was merged Aug 30, 2022 Loading…
Cleanup/overhaul, fixed file leak
#101 by fredlas was merged Aug 19, 2022 Loading…
delete fastqpreprocessing executables from repo, add them to .gitignore
#100 by fredlas was merged Aug 19, 2022 Loading…
add -y to apt-get upgrade in Dockerfile
#99 by fredlas was merged Aug 19, 2022 Loading…
format cleanup: applied a consistent style, whitespace+indent cleanup
#98 by fredlas was merged Aug 16, 2022 Loading…
2
Sideseq metrics
#96 by khajoue2 was merged Jun 13, 2022 Loading…
1
Tools to process slideseq data
#95 by khajoue2 was merged Mar 9, 2022 Loading…
1
Process fastqs with costume read structures
#94 by khajoue2 was closed Mar 7, 2022 Loading…
added option to output-format as either FASTQ or BAM
#92 by kishorikonwar was merged Jan 31, 2022 Loading…
1
Metric computation
#88 by kishorikonwar was merged Aug 30, 2021 Loading…
145
updated to change uint32 to uint64 for file size and disabled EOF requirement for gz files
#87 by kishorikonwar was merged Nov 3, 2020 Loading…
Kmk v3 fix
#86 by kishorikonwar was merged Oct 23, 2020 Loading…
GL-1148: update_sctools_deps
#84 by nikellepetrillo was merged Oct 14, 2020 Loading…
3
Update README.rst
#83 by amcnicho was merged Aug 30, 2022 Loading…
A new step call fastqprocessing for Optimus to speed up
#82 by kishorikonwar was merged Sep 28, 2020 Loading…
124
gl_1148_updating_sctools_dependencies
#81 by nikellepetrillo was merged Aug 31, 2020 Loading…
2
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