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@JaneliaSciComp

Howard Hughes Medical Institute

GitHub organization maintained by Scientific Computing Software at HHMI's Janelia Research Campus for use by HHMI staff and external collaborators.

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  1. bigstream bigstream Public

    Tools for distributed alignment of massive images

    Jupyter Notebook 67 21

  2. NIDAQ.jl NIDAQ.jl Public

    National Instruments Data Acquisition Interface

    Julia 46 16

  3. JRCLUST JRCLUST Public

    JRCLUST

    MATLAB 33 22

  4. multifish multifish Public

    EASI-FISH analysis pipeline for spatial transcriptomics

    Jupyter Notebook 32 13

  5. xarray-multiscale xarray-multiscale Public

    scalable multiscale image pyramids in python

    Python 25 2

  6. SharkViewer SharkViewer Public

    SharkViewer is a web-based viewer for SWC neuron files. It is written entirely in JavaScript using Three.js.

    JavaScript 23 9

Repositories

Showing 10 of 259 repositories
  • bigstream Public

    Tools for distributed alignment of massive images

    JaneliaSciComp/bigstream’s past year of commit activity
    Jupyter Notebook 67 BSD-3-Clause 21 10 2 Updated Jun 28, 2024
  • EM_recon_pipeline Public

    Pipeline scripts and tools for reconstructing Electron Microscopy volumes.

    JaneliaSciComp/EM_recon_pipeline’s past year of commit activity
    Python 1 BSD-3-Clause 1 0 1 Updated Jun 28, 2024
  • easifish Public
    JaneliaSciComp/easifish’s past year of commit activity
    Nextflow 0 BSD-3-Clause 0 0 0 Updated Jun 27, 2024
  • JaneliaDataStandards Public

    A pilot experiment to dissminate information about Janelia's biomaging data formats.

    JaneliaSciComp/JaneliaDataStandards’s past year of commit activity
    CSS 10 BSD-3-Clause 2 3 4 Updated Jun 27, 2024
  • G4_Display_Tools Public

    Collection of tools for the G4 LED arena displays.

    JaneliaSciComp/G4_Display_Tools’s past year of commit activity
    MATLAB 2 CC-BY-4.0 1 15 0 Updated Jun 27, 2024
  • dis-utilities Public

    Utilities for Data and Information Services

    JaneliaSciComp/dis-utilities’s past year of commit activity
    JavaScript 0 BSD-3-Clause 0 4 0 Updated Jun 27, 2024
  • doi_common Public

    Library of common DOI-related functions for Python

    JaneliaSciComp/doi_common’s past year of commit activity
    Python 0 BSD-3-Clause 0 1 0 Updated Jun 27, 2024
  • containers Public

    Containers for workflow plugins

    JaneliaSciComp/containers’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Jun 26, 2024
  • multifish Public

    EASI-FISH analysis pipeline for spatial transcriptomics

    JaneliaSciComp/multifish’s past year of commit activity
    Jupyter Notebook 32 BSD-3-Clause 13 19 0 Updated Jun 26, 2024
  • stitching-spark Public Forked from saalfeldlab/stitching-spark

    Reconstruct big images from overlapping tiled images on a Spark cluster.

    JaneliaSciComp/stitching-spark’s past year of commit activity
    Java 0 GPL-2.0 9 0 1 Updated Jun 26, 2024
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