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fepegar committed Jun 4, 2019
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8 changes: 4 additions & 4 deletions doc/source/filename_matching.md
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Expand Up @@ -8,7 +8,7 @@ manner.
To facilitate the cross-subject analysis, the user should specify lists of
files to be used. For example, the relevant configurations could be:

```
```ini
[SYSTEM]
dataset_split_file = '/mnt/data/cross_validation_fold_01.csv'

Expand All @@ -26,19 +26,19 @@ where `[MRI_T1]` and `[segmentation_target]` are input source sections, with
The csv files should be created beforehand by the user and share the same set
of unique subject identifier (“subject ID”) among them, for example:

Content of t1_list.csv:
Contents of `t1_list.csv`:
```
subject_001,/mnt/data/t1/T1_001_img.nii.gz
subject_002,/mnt/data/t1/T1_002_img.nii.gz
```

Content of ground_truth.csv:
Contents of `ground_truth.csv`:
```
subject_001,/mnt/data/ground_truth/001_img_seg.nii.gz
subject_002,/mnt/data/ground_truth/002_img_seg.nii.gz
```

Content of cross_validation_fold_01.txt:
Contents of `cross_validation_fold_01.csv`:
```
subject_001,training
subject_002,inference
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