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LANL-Bioinformatics

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  1. EDGE EDGE Public

    EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.

    Perl 73 31

  2. PhaME PhaME Public

    Forked from sanahmed/PhaME

    Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to construct a phylogenetic tree. Provides evolutionary analyses (gene…

    Perl 31 15

  3. FaQCs FaQCs Public

    Forked from chienchi/FaQCs

    Quality Control of Next Generation Sequencing Data

    C++ 22 8

  4. GOTTCHA GOTTCHA Public

    Forked from poeli/GOTTCHA

    Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:

    Perl 22 6

  5. MeGAMerge MeGAMerge Public

    MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs)

    Perl 14 7

  6. ADEPT ADEPT Public

    ADEPT is the only tool to date that dynamically assesses errors within reads by comparing position-specific and neighboring base quality scores with the distribution for the dataset being analyzed.

    Perl 7 4

Repositories

Showing 10 of 25 repositories
  • EDGE Public

    EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.

    LANL-Bioinformatics/EDGE’s past year of commit activity
    Perl 73 GPL-3.0 31 5 0 Updated Sep 30, 2024
  • EDGE_workflows Public
    LANL-Bioinformatics/EDGE_workflows’s past year of commit activity
    Perl 0 GPL-3.0 0 0 1 Updated Sep 25, 2024
  • synthetic_transkingdom_data Public
    LANL-Bioinformatics/synthetic_transkingdom_data’s past year of commit activity
    Jupyter Notebook 1 BSD-3-Clause 0 0 0 Updated Mar 21, 2024
  • normalCowboy Public
    LANL-Bioinformatics/normalCowboy’s past year of commit activity
    Jupyter Notebook 2 BSD-3-Clause 0 0 0 Updated Mar 13, 2024
  • NASA_GeneLab_workflows Public
    LANL-Bioinformatics/NASA_GeneLab_workflows’s past year of commit activity
    WDL 0 0 0 0 Updated Dec 4, 2023
  • PhaME Public Forked from sanahmed/PhaME

    Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to construct a phylogenetic tree. Provides evolutionary analyses (genes under positive selection) using CDS SNPs.

    LANL-Bioinformatics/PhaME’s past year of commit activity
    Perl 31 GPL-3.0 18 14 1 Updated Nov 28, 2023
  • phame-app Public
    LANL-Bioinformatics/phame-app’s past year of commit activity
    JavaScript 0 0 2 8 Updated May 25, 2023
  • ramifi Public Forked from lanl/ramifi

    Recombinant And Mixed-Infection Finder for SARS-CoV-2

    LANL-Bioinformatics/ramifi’s past year of commit activity
    HTML 1 GPL-3.0 2 0 0 Updated Jan 25, 2023
  • nmdc-schema Public Forked from microbiomedata/nmdc-schema

    This repository contains the LinkML specification for the NMDC schema and the artifacts generated by LinkML.

    LANL-Bioinformatics/nmdc-schema’s past year of commit activity
    Python 0 CC0-1.0 8 0 0 Updated Feb 11, 2022
  • Lo-et-al-Bioinformatics-EC-19-data Public
    LANL-Bioinformatics/Lo-et-al-Bioinformatics-EC-19-data’s past year of commit activity
    0 0 0 0 Updated Jan 14, 2022
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