Outputs

Documentation for outputs to be parsed from NPcore to Pmetrics. This is a working document, subject to change

obs.csv

Should contain id, observed concentration, time, (outeq)

id|obs|time|outeq

for i in outeq: for obs in Observations

event.csv

Dose information, e.g. amount, compartment, time

id|dose|time|dur|compartment

for i in compartment: for i in Scenario

pred.csv

Should contain id, time, outeq, postMean, postMedian, popMean, popMedian

id|time|outeq|postMean|postMedian|popMean|popMedian

for i in outeq:

theta.csv

Should contain the final support points with probability (w) Possibly ordered by probability (w), but that is not important.

Each support point should be on a line, e.g.

point_number|Ka|Ke|Vd|prob

posterior.csv

Should contain the posterior support points for each id See NPex$final$postMean for an example. E.g. post x theta, then

id|Ka|Ke|Vd|icen|prob

for i in c(mean, median): for id in ids:

pop.csv

Should contain the mean and median parameter value for the population, e.g. E.g. multiply post x theta, get M where row = subject, column is parameter. Report mean and median

Ka|Ke|Vd|icen

cycles.csv

Should contain the cycle information

cycle_number|likelihood|#points|gamma/lambda|mean_param|median_param|sd_param|?aic|?bic

cov.csv

Should contain the covariates at each timepoint for each individual. Should also report the value of any secondary variables that are generated in #SEC

id|time|covariate|covariate|secondary_variable|secondary_variable|secondary_variable