R_pipeline_after_Qiime2

Try to collect or wirte codes including most common analysis in microbial diversity study after qiime2. ###a course is recorded ##buy link:https://item.taobao.com/item.htm?spm=a1z10.3-c.w4002-8693264947.16.5aaf353cu2hvs0&id=668092090728
1.diversity_rarefaction.r
2.subsampling_to_same_depth.r
3.diversity_index.r
4.diversity_boxplot.r
5.diversity_barplot.R
6.diversity_dotchart.R
7.diversity_violine.R
8.simple_pca.r
9.simple_pcoa.r
10.simple_nmds.r
11.twogroup_pca.r
12.twogroup_pcoa.r
13.twogroup_nmds.r
14.simple_oplsda_2factor.r
15.simple_plsda_multifactor.r
16.side_boxplot_pcoa.r
17.pcoa_envfit.r
18.nmds_envfit.r
19.pca_envfit.r
20.simple_cca.r
21.simple_rda.r
22.venn.r
23.merge_feature_tax.r
24.to_percentage.r
25.taxonomy_split.r
26.unifrac_distance.r
27.bray_curtis_other.r
28.pick_top.r
29.pick_percent.r
30.pick_present_in_all_sample.r
31.pick_present_in_groups.r
32.simple_stacked_bar.r
33.ordered_group_stacked_bar.r
34.stacked_bar_error_allluvial.r
35.group_mean.r
36.circos_community_plot.R 
37.sankey_alluvial_ggforce.r
38.multiple_kw_wicox_boxplot.r
39.simple_network.r
40.cytoscape or gephi tutorial
41.network_attribute.r
42.zp_single_network.r
43.zp_multi_network.r
44.degree_distribution.r
45.simple_heatmap.r
46.wilcox_heatmap.r
47.simple_correlation_heatmap.r
48.two_factor_correlation_heatmap.r
49.ggcor_test.r
50.ggtern_test.r
51.ggtern_wicox.r
52.randomforest_continous_MSE.r
53.randomeforest_discrete.r 
54.Maaslin2_test.r
55.betaNTI_RC_eclogical_process
56.plspm_SEM.r
57.piecewiseSEM.r
58.lefse_in_R.r
59.sourcetracker_test