Releases: MSGFPlus/msgfplus
Releases · MSGFPlus/msgfplus
Release 2024.03.26
MSGFPlus_v20240326.zip has:
| File | Description | Requirements |
|---|---|---|
| MSGFPlus.jar | MS-GF+ search engine | Java runtime, v1.8 or newer |
| MzidToTsvConverter.exe | Converts .mzid files to a tab-delimited text file | .NET Runtime 4.7.2 or newer |
| Documentation files | HTML files explaining how to use the software | n/a |
| Example files | Example modification files and example results | n/a |
Changes in this release:
- Update to Apache Commons Text v1.11.0 to fix a vulnerability detected by Dependabot
Release 2023.01.12
MSGFPlus_v20230112.zip has:
| File | Description | Requirements |
|---|---|---|
| MSGFPlus.jar | MS-GF+ search engine | Java runtime, v1.8 or newer |
| MzidToTsvConverter.exe | Converts .mzid files to a tab-delimited text file | .NET Runtime 4.7.2 or newer |
| Documentation files | HTML files explaining how to use the software | n/a |
| Example files | Example modification files and example results | n/a |
Changes in this release:
- Add a parameter to override the result of a spectrum peak distance check when the spectrum was read as centroided from an mzML or mzXML file
Release 2022.04.18
MSGFPlus_v20220418.zip has:
| File | Description | Requirements |
|---|---|---|
| MSGFPlus.jar | MS-GF+ search engine | Java runtime, v1.8 or newer |
| MzidToTsvConverter.exe | Converts .mzid files to a tab-delimited text file | .NET Runtime 4.7.2 or newer |
| Documentation files | HTML files explaining how to use the software | n/a |
| Example files | Example modification files and example results | n/a |
Changes in this release:
- Check for out-of-range mass values when generating candidate peptides while using negative dynamic mods
Release 2022.02.16
MSGFPlus_v20220107.zip has:
| File | Description | Requirements |
|---|---|---|
| MSGFPlus.jar | MS-GF+ search engine | Java runtime, v1.8 or newer |
| MzidToTsvConverter.exe | Converts .mzid files to a tab-delimited text file | .NET Runtime 4.7.2 or newer |
| Documentation files | HTML files explaining how to use the software | n/a |
| Example files | Example modification files and example results | n/a |
Changes in this release:
- Add Zenodo .json file to obtain a DOI
Release 2022.01.07
MSGFPlus_v20220107.zip has:
| File | Description | Requirements |
|---|---|---|
| MSGFPlus.jar | MS-GF+ search engine | Java runtime, v1.8 or newer |
| MzidToTsvConverter.exe | Converts .mzid files to a tab-delimited text file | .NET Runtime 4.7.2 or newer |
| Documentation files | HTML files explaining how to use the software | n/a |
| Example files | Example modification files and example results | n/a |
Changes in this release:
- Add support for RTINSECONDS having a time range in .mgf files
Release 2021.09.06
MSGFPlus_v20210906.zip has:
| File | Description | Requirements |
|---|---|---|
| MSGFPlus.jar | MS-GF+ search engine | Java runtime, v1.8 or newer |
| MzidToTsvConverter.exe | Converts .mzid files to a tab-delimited text file | .NET Runtime 4.7.2 or newer |
| Documentation files | HTML files explaining how to use the software | n/a |
| Example files | Example modification files and example results | n/a |
Changes in this release:
- Show warnings when scores are out of the expected range, but continue searching
- Updated example parameter files
Release 2021.03.22
MSGFPlus_v20210322.zip has:
| File | Description | Requirements |
|---|---|---|
| MSGFPlus.jar | MS-GF+ search engine | Java runtime, v1.8 or newer |
| MzidToTsvConverter.exe | Converts .mzid files to a tab-delimited text file | .NET Runtime 4.7.2 or newer |
| Documentation files | HTML files explaining how to use the software | n/a |
| Example files | Example modification files and example results | n/a |
Changes in this release:
- Show the value for IgnoreMetCleavage at runtime
- Updated example parameter files
Release 2021.01.08
MSGFPlus_v20210108.zip has:
| File | Description | Requirements |
|---|---|---|
| MSGFPlus.jar | MS-GF+ search engine | Java runtime, v1.8 or newer |
| MzidToTsvConverter.exe | Converts .mzid files to a tab-delimited text file | .NET Runtime 4.7.2 or newer |
| Documentation files | HTML files explaining how to use the software | n/a |
| Example files | Example modification files and example results | n/a |
Changes in this release:
- Show the spectrum file name and format when opening the input file
- Update .mgf parsing logic to support negative charge states
- Warn of negative polarity spectra in .mzML and .mgf files
Release 2020.08.05
MSGFPlus_v20200622.zip has:
| File | Description | Requirements |
|---|---|---|
| MSGFPlus.jar | MS-GF+ search engine | Java runtime, v1.8 or newer |
| MzidToTsvConverter.exe | Converts .mzid files to a tab-delimited text file | .NET Runtime 4.7.2 or newer |
| Documentation files | HTML files explaining how to use the software | n/a |
| Example files | Example modification files and example results | n/a |
Changes in this release:
- Add .faa as a supported extension for FASTA files
Release 2020.06.22
MSGFPlus_v20200622.zip has:
| File | Description | Requirements |
|---|---|---|
| MSGFPlus.jar | MS-GF+ search engine | Java runtime, v1.8 or newer |
| MzidToTsvConverter.exe | Converts .mzid files to a tab-delimited text file | .NET Runtime 4.7.2 or newer |
| Documentation files | HTML files explaining how to use the software | n/a |
| Example files | Example modification files and example results | n/a |
Changes in this release:
- Show progress messages every 2 seconds when indexing the FASTA file