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Fix the gompers bug!
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tacazares committed Nov 14, 2022
1 parent 3836ae6 commit 667f0ee
Showing 1 changed file with 0 additions and 8 deletions.
8 changes: 0 additions & 8 deletions maxatac/utilities/prediction_tools.py
Original file line number Diff line number Diff line change
Expand Up @@ -177,10 +177,6 @@ def create_prediction_regions(chromosomes: list,

final_windows = blacklisted_windows

tmp_df = blacklisted_windows.to_dataframe()

print(tmp_df.groupby(["chrom"]).count()["start"])

if peaks:
peaks_bt = pybedtools.BedTool(peaks)

Expand All @@ -203,10 +199,6 @@ def create_prediction_regions(chromosomes: list,
# Reset index so that it goes from 0-end in order
df = df.reset_index(drop=True)

print(df.groupby(["chr"]).count()["start"])

gompers = gompers

return df


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