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Commits on Feb 1, 2024

• Merge pull request #123 from ANRudrapatna/patch-1

  ANRudrapatna

  committedFeb 1, 2024
  7d17878

• Merge pull request #127 from MiraldiLab/ANRudrapatna-patch-2

  ANRudrapatna

  committedFeb 1, 2024
  5f50fab

Commits on Jan 22, 2024

• Update prediction_tools.py

  ANRudrapatna

  committedJan 22, 2024
  eeb4e42

Commits on Nov 10, 2023

• Merge pull request #125 from XiaotingChen/main

  emiraldi

  committedNov 10, 2023
  8ba14a4

Commits on Nov 9, 2023

• Fixing ModuleNotFoundError: No module named 'keras.utils.data_utils'

  XiaotingChen

  committedNov 9, 2023
  2170203

Commits on Sep 10, 2023

• Update train.md

  ANRudrapatna

  committedSep 10, 2023
  a7d6be2

Commits on Mar 30, 2023

• Merge pull request #118 from XiaotingChen/main

  emiraldi

  committedMar 30, 2023
  dc42092

Commits on Mar 29, 2023

• Update DEFAULT_BENCHMARKING_BIN_SIZE to align with publication

  XiaotingChen

  committedMar 29, 2023
  dd316e3

Commits on Feb 2, 2023

• manuscript update

  emiraldi

  committedFeb 2, 2023
  83cd5d2

Commits on Jan 23, 2023

• Merge pull request #113 from MiraldiLab/tests

  tacazares

  committedJan 23, 2023
  0ab73fb

Commits on Jan 20, 2023

• Update git clone and wget commands

  michael-kotliar

  committedJan 20, 2023
  31abfa8

Commits on Jan 18, 2023

• update predict.md so that --name- arg is required

  emiraldi

  committedJan 18, 2023
  702312c

Commits on Nov 29, 2022

• #112 Remove hardcoded chrom paths from prepare scripts

  tacazares

  committedNov 29, 2022
  2b8ca3d

• Readme updates and update to parser options for prediction.

  tacazares

  committedNov 29, 2022
  3a09bb1

Commits on Nov 15, 2022

• Update prediction thresholding scripts

  tacazares

  committedNov 15, 2022
  47705c7

Commits on Nov 14, 2022

• Change logger to update in setup_logger

  tacazares

  committedNov 14, 2022
  454430d

• Fix the gompers bug!

  tacazares

  committedNov 14, 2022
  667f0ee

Commits on Nov 11, 2022

• #109 #77 Update parser and logging.error to logging.info, tmp fix for peak-based predictions

  tacazares

  committedNov 11, 2022
  3836ae6

Commits on Oct 4, 2022

• Update and remove TOBIAS + MOODS

  tacazares

  committedOct 4, 2022
  e08be57

Commits on Sep 28, 2022

• Fixed problem with updating reference genome names based on flags

  tacazares

  committedSep 28, 2022
  2918583

• Update test_average.py

  tacazares

  committedSep 28, 2022
  8eb13f5

• Added skeleton code for replicating MOODS analysis from maxATAC

  tacazares

  committedSep 28, 2022
  3abe9be

Commits on Sep 20, 2022

• Pre-rebase update

  tacazares

  committedSep 20, 2022
  5af0456

• Update prepare and average script structure

  tacazares

  committedSep 20, 2022
  e35dc86

• tests for average, prepare, and normalize

  tacazares

  committedSep 20, 2022
  b81f49b

• The major changes were to the average function.

  tacazares

  committedSep 20, 2022
  56fe67d

Commits on Jul 23, 2022

• mods to paths

  FaizRizvi

  committedJul 23, 2022
  2eda94c

• update in parser

  FaizRizvi

  committedJul 23, 2022
  e6e352e

• typos change in variable names

  FaizRizvi

  committedJul 23, 2022
  10d6bee

• update blacklist and blacklist_bw params

  FaizRizvi

  committedJul 23, 2022
  bf3b297

• Update Paths for different genome builds

  FaizRizvi

  committedJul 23, 2022
  53e8208

• Update Paths for different genome builds

  FaizRizvi

  committedJul 23, 2022
  2ef6576

• update blacklist and blacklist_bw params

  FaizRizvi

  committedJul 23, 2022
  be8891d

• update readme params

  FaizRizvi

  committedJul 23, 2022
  190868c

Commits on Jun 10, 2022

• parser typo

  FaizRizvi

  committedJun 10, 2022
  4ad3cdc

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