Merge repos #6
Merged
Merge repos #6
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
added 23 commits
January 17, 2021 23:55
There was an issue in the data generator where the for loop terminated earlier than it was supposed to because it was improperly indented.
This code was hanging on OSC with the use of keras.fit() instead of fit_generator(). I switched back to fit_generator(). I was able to run on my laptop, but will test OSC.
I tried using the fit() method instead of the fit_generator method with a class object I made, but it would prematuraely exit. I will test this version on OSC.
I did a rough merge of the maxATAC repo for the Miraldi Lab. This repo mostly had average, normalization, and docs to contribute. I merge it with the branch balaji has been working on : maxatac_v2 branch pcpc-rr-MM-Q-hg38-mCL
There was an error with embedding an image into a pdf so I changed the extensions to png.
The headers that the ROI generator was producing was different than the ones that the training script was referencing.
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
This is the code used for the Tn5 window analysis and is a copy of the code Balaji and Faiz are using with additional ROI, prediction, and benchmarking code.