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Migrate codestyle to Black v24
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juhoinkinen committed Feb 26, 2024
1 parent 0d620dc commit d4dbd73
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Showing 53 changed files with 81 additions and 35 deletions.
1 change: 1 addition & 0 deletions annif/analyzer/__init__.py
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"""Collection of language-specific analyzers and analyzer registry for Annif"""

from __future__ import annotations

import re
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1 change: 1 addition & 0 deletions annif/analyzer/analyzer.py
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"""Common functionality for analyzers."""

from __future__ import annotations

import abc
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1 change: 1 addition & 0 deletions annif/analyzer/simple.py
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"""Simple analyzer for Annif. Only folds words to lower case."""

from __future__ import annotations

from . import analyzer
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1 change: 1 addition & 0 deletions annif/analyzer/simplemma.py
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"""Simplemma analyzer for Annif, based on simplemma lemmatizer."""

from __future__ import annotations

import simplemma
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1 change: 1 addition & 0 deletions annif/analyzer/snowball.py
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"""Snowball analyzer for Annif, based on nltk Snowball stemmer."""

from __future__ import annotations

import functools
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1 change: 1 addition & 0 deletions annif/analyzer/spacy.py
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"""spaCy analyzer for Annif which uses spaCy for lemmatization"""

from __future__ import annotations

import annif.util
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1 change: 1 addition & 0 deletions annif/analyzer/voikko.py
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"""Voikko analyzer for Annif, based on libvoikko library."""

from __future__ import annotations

import functools
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1 change: 1 addition & 0 deletions annif/backend/__init__.py
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"""Registry of backend types for Annif"""

from __future__ import annotations

from typing import TYPE_CHECKING, Type
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1 change: 1 addition & 0 deletions annif/backend/backend.py
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"""Common functionality for backends."""

from __future__ import annotations

import abc
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1 change: 1 addition & 0 deletions annif/backend/dummy.py
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"""Dummy backend for testing basic interaction of projects and backends"""

from __future__ import annotations

from typing import TYPE_CHECKING, Any
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1 change: 1 addition & 0 deletions annif/backend/ensemble.py
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"""Ensemble backend that combines results from multiple projects"""

from __future__ import annotations

from typing import TYPE_CHECKING, Any
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1 change: 1 addition & 0 deletions annif/backend/fasttext.py
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"""Annif backend using the fastText classifier"""

from __future__ import annotations

import collections
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1 change: 1 addition & 0 deletions annif/backend/http.py
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"""HTTP/REST client backend that makes calls to a web service
and returns the results"""

from __future__ import annotations

import importlib
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1 change: 1 addition & 0 deletions annif/backend/hyperopt.py
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"""Hyperparameter optimization functionality for backends"""

from __future__ import annotations

import abc
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1 change: 1 addition & 0 deletions annif/backend/mixins.py
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"""Annif backend mixins that can be used to implement features"""

from __future__ import annotations

import abc
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1 change: 1 addition & 0 deletions annif/backend/mllm.py
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"""Maui-like Lexical Matching backend"""

from __future__ import annotations

import os.path
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1 change: 1 addition & 0 deletions annif/backend/nn_ensemble.py
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"""Neural network based ensemble backend that combines results from multiple
projects."""

from __future__ import annotations

import os.path
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1 change: 1 addition & 0 deletions annif/backend/omikuji.py
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"""Annif backend using the Omikuji classifier"""

from __future__ import annotations

import os.path
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17 changes: 10 additions & 7 deletions annif/backend/pav.py
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learns which concept suggestions from each backend are trustworthy using the
PAV algorithm, a.k.a. isotonic regression, to turn raw scores returned by
individual backends into probabilities."""

from __future__ import annotations

import os.path
Expand Down Expand Up @@ -69,13 +70,15 @@ def _merge_source_batches(
reg_models = self._get_model(project_id)
pav_batch = [
[
SubjectSuggestion(
subject_id=sugg.subject_id,
score=reg_models[sugg.subject_id].predict([sugg.score])[0],
)
if sugg.subject_id in reg_models
else SubjectSuggestion(
subject_id=sugg.subject_id, score=sugg.score
(
SubjectSuggestion(
subject_id=sugg.subject_id,
score=reg_models[sugg.subject_id].predict([sugg.score])[0],
)
if sugg.subject_id in reg_models
else SubjectSuggestion(
subject_id=sugg.subject_id, score=sugg.score
)
) # default to raw score
for sugg in result
]
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1 change: 1 addition & 0 deletions annif/backend/svc.py
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@@ -1,4 +1,5 @@
"""Annif backend using a SVM classifier"""

from __future__ import annotations

import os.path
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1 change: 1 addition & 0 deletions annif/backend/tfidf.py
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"""Backend that returns most similar subjects based on similarity in sparse
TF-IDF normalized bag-of-words vector space"""

from __future__ import annotations

import os.path
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1 change: 1 addition & 0 deletions annif/backend/yake.py
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@@ -1,4 +1,5 @@
"""Annif backend using Yake keyword extraction"""

# For license remarks of this backend see README.md:
# https://github.com/NatLibFi/Annif#license.
from __future__ import annotations
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1 change: 0 additions & 1 deletion annif/cli.py
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@@ -1,7 +1,6 @@
"""Definitions for command-line (Click) commands for invoking Annif
operations and printing the results to console."""


import collections
import importlib
import json
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1 change: 1 addition & 0 deletions annif/cli_util.py
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"""Utility functions for Annif CLI commands"""

from __future__ import annotations

import collections
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1 change: 1 addition & 0 deletions annif/config.py
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"""Configuration file handling"""

from __future__ import annotations

import configparser
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1 change: 0 additions & 1 deletion annif/corpus/__init__.py
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@@ -1,6 +1,5 @@
"""Annif corpus operations"""


from .combine import CombinedCorpus
from .document import (
DocumentDirectory,
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1 change: 1 addition & 0 deletions annif/corpus/combine.py
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@@ -1,4 +1,5 @@
"""Class for combining multiple corpora so they behave like a single corpus"""

from __future__ import annotations

import itertools
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1 change: 1 addition & 0 deletions annif/corpus/document.py
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"""Clases for supporting document corpora"""

from __future__ import annotations

import glob
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15 changes: 10 additions & 5 deletions annif/corpus/skos.py
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"""Support for subjects loaded from a SKOS/RDF file"""

from __future__ import annotations

import collections
Expand Down Expand Up @@ -83,11 +84,15 @@ def languages(self) -> set[str]:
def _concept_labels(self, concept: URIRef) -> dict[str, str]:
by_lang = self.get_concept_labels(concept, self.PREF_LABEL_PROPERTIES)
return {
lang: by_lang[lang][0]
if by_lang[lang] # correct lang
else by_lang[None][0]
if by_lang[None] # no language
else self.graph.namespace_manager.qname(concept)
lang: (
by_lang[lang][0]
if by_lang[lang] # correct lang
else (
by_lang[None][0]
if by_lang[None] # no language
else self.graph.namespace_manager.qname(concept)
)
)
for lang in self.languages
}

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1 change: 1 addition & 0 deletions annif/corpus/subject.py
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"""Classes for supporting subject corpora expressed as directories or files"""

from __future__ import annotations

import csv
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1 change: 1 addition & 0 deletions annif/corpus/types.py
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"""Basic types for document and subject corpora"""

from __future__ import annotations

import abc
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1 change: 1 addition & 0 deletions annif/datadir.py
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"""Mixin class for types that need a data directory"""

from __future__ import annotations

import os
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7 changes: 4 additions & 3 deletions annif/eval.py
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@@ -1,4 +1,5 @@
"""Evaluation metrics for Annif"""

from __future__ import annotations

import warnings
Expand Down Expand Up @@ -86,9 +87,9 @@ def __init__(self, subject_index: SubjectIndex) -> None:

def evaluate_many(
self,
suggestion_batch: list[list[SubjectSuggestion]]
| SuggestionBatch
| list[Iterator],
suggestion_batch: (
list[list[SubjectSuggestion]] | SuggestionBatch | list[Iterator]
),
gold_subject_batch: Sequence[SubjectSet],
) -> None:
if not isinstance(suggestion_batch, SuggestionBatch):
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1 change: 1 addition & 0 deletions annif/exception.py
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@@ -1,4 +1,5 @@
"""Custom exceptions used by Annif"""

from __future__ import annotations

from click import ClickException
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1 change: 1 addition & 0 deletions annif/lexical/mllm.py
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"""MLLM (Maui-like Lexical Matchin) model for Annif"""

from __future__ import annotations

import collections
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1 change: 1 addition & 0 deletions annif/lexical/tokenset.py
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@@ -1,4 +1,5 @@
"""Index for fast matching of token sets."""

from __future__ import annotations

import collections
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1 change: 1 addition & 0 deletions annif/lexical/util.py
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"""Utility methods for lexical algorithms"""

from __future__ import annotations

import collections
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1 change: 1 addition & 0 deletions annif/openapi/validation.py
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"""Custom validator for the Annif API."""

from __future__ import annotations

import logging
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1 change: 1 addition & 0 deletions annif/parallel.py
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"""Parallel processing functionality for Annif"""

from __future__ import annotations

import multiprocessing
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1 change: 1 addition & 0 deletions annif/project.py
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"""Project management functionality for Annif"""

from __future__ import annotations

import enum
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1 change: 1 addition & 0 deletions annif/registry.py
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"""Registry that keeps track of Annif projects"""

from __future__ import annotations

import re
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1 change: 1 addition & 0 deletions annif/rest.py
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"""Definitions for REST API operations. These are wired via Connexion to
methods defined in the OpenAPI specification."""

from __future__ import annotations

import importlib
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1 change: 1 addition & 0 deletions annif/suggestion.py
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"""Representing suggested subjects."""

from __future__ import annotations

import collections
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1 change: 1 addition & 0 deletions annif/transform/__init__.py
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"""Functionality for obtaining text transformation from string specification"""

from __future__ import annotations

import re
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1 change: 1 addition & 0 deletions annif/transform/inputlimiter.py
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"""A simple transformation that truncates the text of input documents to a
given character length."""

from __future__ import annotations

from typing import TYPE_CHECKING
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1 change: 1 addition & 0 deletions annif/transform/langfilter.py
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"""Transformation filtering out parts of a text that are in a language
different from the language of the project."""

from __future__ import annotations

from typing import TYPE_CHECKING
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1 change: 1 addition & 0 deletions annif/transform/transform.py
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"""Common functionality for transforming text of input documents."""

from __future__ import annotations

import abc
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1 change: 1 addition & 0 deletions annif/util.py
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"""Utility functions for Annif"""

from __future__ import annotations

import glob
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1 change: 1 addition & 0 deletions annif/vocab.py
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"""Vocabulary management functionality for Annif"""

from __future__ import annotations

import os.path
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