Release 0.12.0 (#537)

* update copyright to 2023 * increment elephant version
NeuralEnsemble · Feb 24, 2023 · 7972fb4 · 7972fb4
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diff --git a/.zenodo.json b/.zenodo.json
@@ -10,26 +10,6 @@
             "affiliation": "Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA-Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany",
             "name": "Köhler, Cristiano"
         },
-        {
-            "orcid": "0000-0002-2403-928X",
-            "affiliation": "Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA-Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany",
-            "name": "Morales-Gregorio, Aitor"
-        },
-        {
-            "orcid": "0000-0003-3776-4226",
-            "affiliation": "Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA-Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany",
-            "name": "Kleinjohann, Alexander"
-        },
-        {
-            "orcid": "0000-0003-2498-0536",
-            "affiliation": "Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA-Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany",
-            "name": "Bouss, Peter"
-        },
-        {
-            "orcid": "0000-0002-3818-5587",
-            "affiliation": "Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA-Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany",
-            "name": "Stella, Alessandra"
-        },
         {
             "orcid": "0000-0003-0789-6279",
             "affiliation": "Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA-Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany",
@@ -40,15 +20,6 @@
             "affiliation": "Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA-Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany",
             "name": "Kramer, Maximilian"
         },
-        {
-            "affiliation": "Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA-Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany",
-            "name": "Kloß, Oliver"
-        },
-        {
-            "orcid": "0000-0002-5555-3206",
-            "affiliation": "Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA-Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany",
-            "name": "Dąbrowska, Paulina"
-        },
         {
             "orcid": "0000-0001-7292-1982",
             "affiliation": "Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA-Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany",
@@ -60,23 +31,13 @@
             "name": "Kurth, Anno Christopher"
         },
         {
-            "orcid": "0000-0001-7373-5962",
+            "orcid": "0000-0001-9170-4422",
             "affiliation": "Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA-Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany",
-            "name": "Gutzen, Robin"
-        },
-        {
-            "orcid": "0000-0003-2401-7862",
-            "affiliation": "Cognitronics and Sensor Systems, CITEC, Bielefeld University, Bielefeld, Germany",
-            "name": "Porrmann, Florian"
-        },
-        {
-            "orcid": "0000-0002-3168-7365",
-            "affiliation": "Cognitronics and Sensor Systems, CITEC, Bielefeld University, Bielefeld, Germany",
-            "name": "Pilz, Sarah"
+            "name": "Ito, Junji"
         }
     ],
 
-    "title": "Elephant 0.11.2",
+    "title": "Elephant 0.12.0",
 
     "keywords": [
     "neuroscience",

diff --git a/LICENSE.txt b/LICENSE.txt
@@ -1,4 +1,4 @@
-Copyright (c) 2014-2022, Elephant authors and contributors
+Copyright (c) 2014-2023, Elephant authors and contributors
 All rights reserved.
 
 Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
@@ -7,4 +7,4 @@ Redistribution and use in source and binary forms, with or without modification,
 * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
 * Neither the names of the copyright holders nor the names of the contributors may be used to endorse or promote products derived from this software without specific prior written permission.
 
-THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
diff --git a/README.md b/README.md
@@ -35,7 +35,7 @@ Modified BSD License, see [LICENSE.txt](LICENSE.txt) for details.
 
 #### Copyright
 
-:copyright: 2014-2022 by the [Elephant team](doc/authors.rst).
+:copyright: 2014-2023 by the [Elephant team](doc/authors.rst).
 
 
 #### Acknowledgments

diff --git a/elephant/VERSION b/elephant/VERSION
@@ -1 +1 @@
-0.12.0b1
+0.12.0
diff --git a/elephant/__init__.py b/elephant/__init__.py
@@ -2,7 +2,7 @@
 """
 Elephant is a package for the analysis of neurophysiology data, based on Neo.
 
-:copyright: Copyright 2014-2022 by the Elephant team, see `doc/authors.rst`.
+:copyright: Copyright 2014-2023 by the Elephant team, see `doc/authors.rst`.
 :license: Modified BSD, see LICENSE.txt for details.
 """
 

diff --git a/elephant/causality/granger.py b/elephant/causality/granger.py
@@ -55,7 +55,7 @@
    :target: https://mybinder.org/v2/gh/NeuralEnsemble/elephant/master
             ?filepath=doc/tutorials/granger_causality.ipynb
 
-:copyright: Copyright 2014-2022 by the Elephant team, see `doc/authors.rst`.
+:copyright: Copyright 2014-2023 by the Elephant team, see `doc/authors.rst`.
 :license: Modified BSD, see LICENSE.txt for details.
 """
 

diff --git a/elephant/conversion.py b/elephant/conversion.py
@@ -70,7 +70,7 @@
 >>> bst # doctest: +ELLIPSIS
 BinnedSpikeTrain(t_start=0.0 ms, t_stop=9000.0 ms, bin_size=1000.0 ms; ...
 
-:copyright: Copyright 2014-2022 by the Elephant team, see `doc/authors.rst`.
+:copyright: Copyright 2014-2023 by the Elephant team, see `doc/authors.rst`.
 :license: BSD, see LICENSE.txt for details.
 """
 

diff --git a/elephant/cubic.py b/elephant/cubic.py
@@ -39,7 +39,7 @@
 >>> kappa # doctest: +SKIP
 [20.1, 22.656565656565657, 27.674706246134818]
 
-:copyright: Copyright 2014-2022 by the Elephant team, see `doc/authors.rst`.
+:copyright: Copyright 2014-2023 by the Elephant team, see `doc/authors.rst`.
 :license: BSD, see LICENSE.txt for details.
 """
 

diff --git a/elephant/gpfa/gpfa.py b/elephant/gpfa/gpfa.py
@@ -65,7 +65,7 @@
 The original MATLAB code is available at Byron Yu's website:
 https://users.ece.cmu.edu/~byronyu/software.shtml
 
-:copyright: Copyright 2014-2022 by the Elephant team, see AUTHORS.txt.
+:copyright: Copyright 2014-2023 by the Elephant team, see AUTHORS.txt.
 :license: Modified BSD, see LICENSE.txt for details.
 """
 

diff --git a/elephant/gpfa/gpfa_core.py b/elephant/gpfa/gpfa_core.py
@@ -2,7 +2,7 @@
 """
 GPFA core functionality.
 
-:copyright: Copyright 2014-2022 by the Elephant team, see AUTHORS.txt.
+:copyright: Copyright 2014-2023 by the Elephant team, see AUTHORS.txt.
 :license: Modified BSD, see LICENSE.txt for details.
 """
 

diff --git a/elephant/gpfa/gpfa_util.py b/elephant/gpfa/gpfa_util.py
@@ -2,7 +2,7 @@
 """
 GPFA util functions.
 
-:copyright: Copyright 2014-2022 by the Elephant team, see AUTHORS.txt.
+:copyright: Copyright 2014-2023 by the Elephant team, see AUTHORS.txt.
 :license: Modified BSD, see LICENSE.txt for details.
 """
 

diff --git a/elephant/kernels.py b/elephant/kernels.py
@@ -67,7 +67,7 @@
 >>> kernel.icdf(0.5)
 array(1.18677054) * s
 
-:copyright: Copyright 2014-2022 by the Elephant team, see `doc/authors.rst`.
+:copyright: Copyright 2014-2023 by the Elephant team, see `doc/authors.rst`.
 :license: Modified BSD, see LICENSE.txt for details.
 """
 

diff --git a/elephant/neo_tools.py b/elephant/neo_tools.py
@@ -10,7 +10,7 @@
     get_all_events
     get_all_epochs
 
-:copyright: Copyright 2014-2022 by the Elephant team, see `doc/authors.rst`.
+:copyright: Copyright 2014-2023 by the Elephant team, see `doc/authors.rst`.
 :license: Modified BSD, see LICENSE.txt for details.
 """
 

diff --git a/elephant/pandas_bridge.py b/elephant/pandas_bridge.py
@@ -13,7 +13,7 @@
     multi_epochs_to_dataframe
     slice_spiketrain
 
-:copyright: Copyright 2014-2022 by the Elephant team, see `doc/authors.rst`.
+:copyright: Copyright 2014-2023 by the Elephant team, see `doc/authors.rst`.
 :license: Modified BSD, see LICENSE.txt for details.
 """
 

diff --git a/elephant/parallel/__init__.py b/elephant/parallel/__init__.py
@@ -32,7 +32,7 @@
     MPICommExecutor
 
 
-:copyright: Copyright 2014-2022 by the Elephant team, see `doc/authors.rst`.
+:copyright: Copyright 2014-2023 by the Elephant team, see `doc/authors.rst`.
 :license: Modified BSD, see LICENSE.txt for details.
 """
 

diff --git a/elephant/phase_analysis.py b/elephant/phase_analysis.py
@@ -19,7 +19,7 @@
    :keyprefix: phase-
    :style: unsrt
 
-:copyright: Copyright 2014-2022 by the Elephant team, see `doc/authors.rst`.
+:copyright: Copyright 2014-2023 by the Elephant team, see `doc/authors.rst`.
 :license: Modified BSD, see LICENSE.txt for details.
 """
 

diff --git a/elephant/signal_processing.py b/elephant/signal_processing.py
@@ -14,7 +14,7 @@
     rauc
     derivative
 
-:copyright: Copyright 2014-2022 by the Elephant team, see `doc/authors.rst`.
+:copyright: Copyright 2014-2023 by the Elephant team, see `doc/authors.rst`.
 :license: Modified BSD, see LICENSE.txt for details.
 """
 

diff --git a/elephant/spade.py b/elephant/spade.py
@@ -98,7 +98,7 @@
 
 Refer to Viziphant documentation to check how to visualzie such patterns.
 
-:copyright: Copyright 2014-2022 by the Elephant team, see `doc/authors.rst`.
+:copyright: Copyright 2014-2023 by the Elephant team, see `doc/authors.rst`.
 :license: BSD, see LICENSE.txt for details.
 """
 from __future__ import division, print_function, unicode_literals

diff --git a/elephant/spectral.py b/elephant/spectral.py
@@ -14,7 +14,7 @@
     multitaper_coherence
 
 
-:copyright: Copyright 2014-2022 by the Elephant team, see `doc/authors.rst`.
+:copyright: Copyright 2014-2023 by the Elephant team, see `doc/authors.rst`.
 :license: Modified BSD, see LICENSE.txt for details.
 """
 

diff --git a/elephant/spike_train_correlation.py b/elephant/spike_train_correlation.py
@@ -11,7 +11,7 @@
     spike_time_tiling_coefficient
     spike_train_timescale
 
-:copyright: Copyright 2014-2022 by the Elephant team, see `doc/authors.rst`.
+:copyright: Copyright 2014-2023 by the Elephant team, see `doc/authors.rst`.
 :license: Modified BSD, see LICENSE.txt for details.
 """
 from __future__ import division, print_function, unicode_literals

diff --git a/elephant/spike_train_dissimilarity.py b/elephant/spike_train_dissimilarity.py
@@ -16,7 +16,7 @@
     victor_purpura_distance
     van_rossum_distance
 
-:copyright: Copyright 2014-2022 by the Elephant team, see `doc/authors.rst`.
+:copyright: Copyright 2014-2023 by the Elephant team, see `doc/authors.rst`.
 :license: Modified BSD, see LICENSE.txt for details.
 """
 

diff --git a/elephant/spike_train_generation.py b/elephant/spike_train_generation.py
@@ -45,7 +45,7 @@
 .. bibliography::
    :keyprefix: generation-
 
-:copyright: Copyright 2014-2022 by the Elephant team, see `doc/authors.rst`.
+:copyright: Copyright 2014-2023 by the Elephant team, see `doc/authors.rst`.
 :license: Modified BSD, see LICENSE.txt for details.
 """
 

diff --git a/elephant/spike_train_surrogates.py b/elephant/spike_train_surrogates.py
@@ -28,7 +28,7 @@
     bin_shuffling
     trial_shifting
 
-:copyright: Copyright 2014-2022 by the Elephant team, see `doc/authors.rst`.
+:copyright: Copyright 2014-2023 by the Elephant team, see `doc/authors.rst`.
 :license: Modified BSD, see LICENSE.txt for details.
 """
 

diff --git a/elephant/spike_train_synchrony.py b/elephant/spike_train_synchrony.py
@@ -13,7 +13,7 @@
     Synchrotool
 
 
-:copyright: Copyright 2014-2022 by the Elephant team, see `doc/authors.rst`.
+:copyright: Copyright 2014-2023 by the Elephant team, see `doc/authors.rst`.
 :license: Modified BSD, see LICENSE.txt for details.
 """
 from __future__ import division, print_function, unicode_literals

diff --git a/elephant/sta.py b/elephant/sta.py
@@ -9,7 +9,7 @@
     spike_triggered_average
     spike_field_coherence
 
-:copyright: Copyright 2014-2022 by the Elephant team, see `doc/authors.rst`.
+:copyright: Copyright 2014-2023 by the Elephant team, see `doc/authors.rst`.
 :license: Modified BSD, see LICENSE.txt for details.
 """
 

diff --git a/elephant/statistics.py b/elephant/statistics.py
@@ -58,7 +58,7 @@
    :keyprefix: statistics-
 
 
-:copyright: Copyright 2014-2022 by the Elephant team, see `doc/authors.rst`.
+:copyright: Copyright 2014-2023 by the Elephant team, see `doc/authors.rst`.
 :license: Modified BSD, see LICENSE.txt for details.
 """
 

diff --git a/elephant/test/test_asset.py b/elephant/test/test_asset.py
@@ -2,7 +2,7 @@
 """
 Unit tests for the ASSET analysis.
 
-:copyright: Copyright 2014-2022 by the Elephant team, see `doc/authors.rst`.
+:copyright: Copyright 2014-2023 by the Elephant team, see `doc/authors.rst`.
 :license: Modified BSD, see LICENSE.txt for details.
 """
 

diff --git a/elephant/test/test_causality.py b/elephant/test/test_causality.py
@@ -2,7 +2,7 @@
 """
 Unit tests for the causality module.
 
-:copyright: Copyright 2014-2022 by the Elephant team, see `doc/authors.rst`.
+:copyright: Copyright 2014-2023 by the Elephant team, see `doc/authors.rst`.
 :license: Modified BSD, see LICENSE.txt for details.
 """
 from __future__ import division, print_function

diff --git a/elephant/test/test_conversion.py b/elephant/test/test_conversion.py
@@ -2,7 +2,7 @@
 """
 Unit tests for the conversion module.
 
-:copyright: Copyright 2014-2022 by the Elephant team, see `doc/authors.rst`.
+:copyright: Copyright 2014-2023 by the Elephant team, see `doc/authors.rst`.
 :license: Modified BSD, see LICENSE.txt for details.
 """
 

diff --git a/elephant/test/test_cubic.py b/elephant/test/test_cubic.py
@@ -2,7 +2,7 @@
 """
 Unit tests for the CUBIC analysis.
 
-:copyright: Copyright 2014-2022 by the Elephant team, see `doc/authors.rst`.
+:copyright: Copyright 2014-2023 by the Elephant team, see `doc/authors.rst`.
 :license: Modified BSD, see LICENSE.txt for details.
 """
 

diff --git a/elephant/test/test_gpfa.py b/elephant/test/test_gpfa.py
@@ -2,7 +2,7 @@
 """
 Unit tests for the GPFA analysis.
 
-:copyright: Copyright 2014-2022 by the Elephant team, see AUTHORS.txt.
+:copyright: Copyright 2014-2023 by the Elephant team, see AUTHORS.txt.
 :license: Modified BSD, see LICENSE.txt for details.
 """
 

diff --git a/elephant/test/test_kernels.py b/elephant/test/test_kernels.py
@@ -2,7 +2,7 @@
 """
 Unit tests for the kernels module.
 
-:copyright: Copyright 2014-2022 by the Elephant team, see `doc/authors.rst`.
+:copyright: Copyright 2014-2023 by the Elephant team, see `doc/authors.rst`.
 :license: Modified BSD, see LICENSE.txt for details.
 """
 

diff --git a/elephant/test/test_neo_tools.py b/elephant/test/test_neo_tools.py
@@ -2,7 +2,7 @@
 """
 Unit tests for the neo_tools module.
 
-:copyright: Copyright 2014-2022 by the Elephant team, see `doc/authors.rst`.
+:copyright: Copyright 2014-2023 by the Elephant team, see `doc/authors.rst`.
 :license: Modified BSD, see LICENSE.txt for details.
 """
 import random

diff --git a/elephant/test/test_pandas_bridge.py b/elephant/test/test_pandas_bridge.py
@@ -2,7 +2,7 @@
 """
 Unit tests for the pandas bridge module.
 
-:copyright: Copyright 2014-2022 by the Elephant team, see `doc/authors.rst`.
+:copyright: Copyright 2014-2023 by the Elephant team, see `doc/authors.rst`.
 :license: Modified BSD, see LICENSE.txt for details.
 """
 

diff --git a/elephant/test/test_phase_analysis.py b/elephant/test/test_phase_analysis.py
@@ -2,7 +2,7 @@
 """
 Unit tests for the phase analysis module.
 
-:copyright: Copyright 2014-2022 by the Elephant team, see `doc/authors.rst`.
+:copyright: Copyright 2014-2023 by the Elephant team, see `doc/authors.rst`.
 :license: Modified BSD, see LICENSE.txt for details.
 """
 from __future__ import division, print_function

diff --git a/elephant/test/test_signal_processing.py b/elephant/test/test_signal_processing.py
@@ -2,7 +2,7 @@
 """
 Unit tests for the signal_processing module.
 
-:copyright: Copyright 2014-2022 by the Elephant team, see `doc/authors.rst`.
+:copyright: Copyright 2014-2023 by the Elephant team, see `doc/authors.rst`.
 :license: Modified BSD, see LICENSE.txt for details.
 """
 from __future__ import division, print_function

diff --git a/elephant/test/test_spade.py b/elephant/test/test_spade.py
@@ -1,7 +1,7 @@
 """
 Unit tests for the spade module.
 
-:copyright: Copyright 2014-2022 by the Elephant team, see `doc/authors.rst`.
+:copyright: Copyright 2014-2023 by the Elephant team, see `doc/authors.rst`.
 :license: Modified BSD, see LICENSE.txt for details.
 """
 from __future__ import division