Primacy GUI

GUI front end for the massively-multiplexed pathogen detection pipeline Primacy

Installing

Dependencies

Install Conda, and follow the Primacy install instructions. Ensure that Primacy is added to your path.

Binaries

Binaries for Linux, OSX, and Windows are available for download from the releases page.

Cloning

To clone and run this repository you'll need Git and Node.js (which comes with npm) installed on your computer. From your command line:

# Clone this repository
git clone https://github.com/PathLabs/primacy_demo

# Go into the repository
cd primacy_demo

# Install dependencies
make install

# Run the app
make start

# Clean the node_modules
make clean

Documentation

Docs are available via JSDoc. To create documentation, follow the instructions for cloning the repo and execute:

npm run docs

HTML docs will then be available for viewing in the docs directory

Contributors

• Chance Nelson chance-nelson@nau.edu
• Austin Kelly atk678@nau.edu
• Alex Lacy al2428@nau.edu
• Turan Naimey TuranNaimey@nau.edu

Acknowledgements

• Tara Furstenau - Primacy
• DataTables