geacont

adds long-read assembly via Flye
major version upgrades to SPAdes and Virulencefinder
minor version upgrades to Resfinder and SeqSero2

geacont

moved invalid taxon catch before assembly.
performs awk floating point calculations using container awk.
removes largest intermediate files to significantly reduce the size of the output results folder.

geacont

Fixed shovill assembly error handling

geacont

First Development Version