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Xbbtree #498

Merged
merged 17 commits into from
Dec 21, 2023
Merged

Xbbtree #498

merged 17 commits into from
Dec 21, 2023

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ArtPoon
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@ArtPoon ArtPoon commented Dec 5, 2023 •
edited by GopiGugan
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Need to add axbbtree.nwk to the test data folder for the Cypress tests

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Fix search by country
73b4efe
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Improve search by country
ec006a5 
- Object that stores the range of id's for clusters in each tree/display
- Fixes an issue when the user selects the next/previous hit from another display
@GopiGugan
Update front-end cypress tests
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GopiGugan commented Dec 12, 2023 •
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  • Fix cypress tests
  • Add unit tests for the new "Display" dropdown
  • Run test on full dataset

GopiGugan
GopiGugan reviewed Dec 12, 2023
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With these changes in batch.py, it would mean that XBB lineages would not appear in the epicov branch. Should these changes be propagated to the epicov branch?

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GopiGugan commented Dec 18, 2023 •
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Checking the following:

  • Search
    • Search by accession number
    • Search by lineage
    • Search by country
    • Search by country (with date filter)
  • Tree filtering
  • Download Time-scaled tree (nwk)
  • Download Time-scaled tree (csv)
  • Download Beadplot (svg)
  • Download Beadplot (nwk)
  • Download mutation list (csv)
  • Beadplot cutoff slider
  • Expanding Beadplot
  • Translated pages
  • Changing the colour of the tree based on divergence, collection date, etc.
  • Left/Right arrow key to move between beads
  • Tooltips
  • Countries/Samples/Mutations tabs are populating the correct information
  • Build front-end database without issues

@GopiGugan GopiGugan merged commit e2cd776 into dev Dec 21, 2023
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@ArtPoon @GopiGugan