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Minor: PEP8 Compliance #533

Merged
merged 29 commits into from
Sep 7, 2024
Merged

Minor: PEP8 Compliance #533

merged 29 commits into from
Sep 7, 2024

Commits on May 13, 2024

  1. made batch.py pep8 compliant

    WilliamZekaiWang authored and WilliamZekaiWang committed May 13, 2024
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  2. made convert_json pep8

    WilliamZekaiWang authored and WilliamZekaiWang committed May 13, 2024
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  3. made local.py pep8

    WilliamZekaiWang authored and WilliamZekaiWang committed May 13, 2024
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  4. setup.py pep8 :)

    WilliamZekaiWang authored and WilliamZekaiWang committed May 13, 2024
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  5. mut_annotation_edit.py pep8

    WilliamZekaiWang authored and WilliamZekaiWang committed May 13, 2024
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  6. pep8'd beadplot.py

    WilliamZekaiWang authored and WilliamZekaiWang committed May 13, 2024
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  7. finished pep8 clustering.py

    WilliamZekaiWang authored and WilliamZekaiWang committed May 13, 2024
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  8. made minimap2 pep8 compliant

    WilliamZekaiWang authored and WilliamZekaiWang committed May 13, 2024
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Commits on May 14, 2024

  1. treetime.py pep8ed

    WilliamZekaiWang authored and WilliamZekaiWang committed May 14, 2024
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  2. first batch of changes for utils

    WilliamZekaiWang authored and WilliamZekaiWang committed May 14, 2024
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Commits on May 15, 2024

  1. batch_utils pep8

    WilliamZekaiWang authored and WilliamZekaiWang committed May 15, 2024
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  2. pep8 gisaid_utils

    WilliamZekaiWang authored and WilliamZekaiWang committed May 15, 2024
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  3. progress utils pep8

    WilliamZekaiWang authored and WilliamZekaiWang committed May 15, 2024
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  4. seq_utils.py pep8

    WilliamZekaiWang authored and WilliamZekaiWang committed May 15, 2024
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  5. pep8 unittests

    WilliamZekaiWang authored and WilliamZekaiWang committed May 15, 2024
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Commits on Jun 10, 2024

  1. unittest for clustering

    WilliamZekaiWang authored and WilliamZekaiWang committed Jun 10, 2024
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Commits on Jul 1, 2024

  1. merge conflcits #531

    WilliamZekaiWang authored and WilliamZekaiWang committed Jul 1, 2024
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  2. updates to pr #531

    WilliamZekaiWang authored and WilliamZekaiWang committed Jul 1, 2024
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Commits on Jul 4, 2024

  1. undid local variable change for pep8

    WilliamZekaiWang authored and WilliamZekaiWang committed Jul 4, 2024
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Commits on Jul 9, 2024

  1. Merge pull request #531 from PoonLab/pep8 

    Pep8
    @ArtPoon
    ArtPoon authored Jul 9, 2024
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Commits on Jul 25, 2024

  1. Potential fix for #532

    @GopiGugan
    GopiGugan committed Jul 25, 2024
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Commits on Aug 10, 2024

  1. Update database backup script 

    Remove interactive option when running the docker exec command
    @GopiGugan
    GopiGugan authored Aug 10, 2024
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Commits on Aug 12, 2024

  1. Fix typo in batch_utils.py

    @GopiGugan
    GopiGugan authored Aug 12, 2024
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  2. Fix import issue

    @GopiGugan
    GopiGugan authored Aug 12, 2024
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Commits on Aug 13, 2024

  1. Fix for minor issues introduced by styling changes

    @GopiGugan
    GopiGugan committed Aug 13, 2024
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Commits on Aug 14, 2024

  1. Add pylint config

    @GopiGugan
    GopiGugan committed Aug 14, 2024
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  2. Create pylint.yml

    @GopiGugan
    GopiGugan authored Aug 14, 2024
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  3. Update pylint rules to ignore

    @GopiGugan
    GopiGugan authored Aug 14, 2024
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Commits on Sep 2, 2024

  1. Turn off molecular clock filtering

    @GopiGugan
    GopiGugan committed Sep 2, 2024
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