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Issues list

Predicates with double 'biolink' prefix in KG2.10.1 - e.g., "biolink:biolink_treats" bug Something isn't working
#416 opened Oct 5, 2024 by amykglen
gene -- causes -> phenotype edge from uniprot?
#415 opened Oct 3, 2024 by amykglen
1
KG2 listed as ingesting deprecated infores:biothings-multiomics-clinicaltrials bug Something isn't working
#414 opened Oct 3, 2024 by amykglen
2
Node Normalization of conflation for T1D
#410 opened Sep 4, 2024 by jaredroach
Pull File from S3 Bucket when cURL Fails caution tricky
#409 opened Sep 2, 2024 by ecwood
PathWhiz?
#407 opened Aug 13, 2024 by cbizon
3
KL/AT Updates
#406 opened Aug 8, 2024 by ecwood
Handling Mondo's disease_responds_to edges
#403 opened Jul 30, 2024 by ecwood
drug_regulatory_status_world_wide is not a valid predicate bug Something isn't working
#402 opened Jul 18, 2024 by amykglen
3
Should we ETL "SMILE" information for small molecule compounds, into KG2pre? question Further information is requested
#401 opened Jul 17, 2024 by saramsey
3
Should edge_id's use the core_predicate when there is no qualified_predicate? question Further information is requested sar-look Marks an issue that Steve needs to examine
#397 opened Jul 10, 2024 by ecwood
Subject Qualifiers
#396 opened Jul 10, 2024 by ecwood
infores:nddf-umls is deprecated
#391 opened Jul 2, 2024 by ecwood
SemMedDB (Final) Update question Further information is requested
#384 opened Jun 27, 2024 by ecwood
Build KG2.9.1
#375 opened Apr 8, 2024 by acevedol
16 of 22 tasks
6
Compliance with Biolink 4.1.1 - Treats Refactor
#373 opened Mar 25, 2024 by acevedol
Error in DGIdb Conversion
#370 opened Mar 13, 2024 by acevedol
1
Add data description and provenance for "SMPDB PubMed annotations" (SMPDB_pubmed_IDs.csv)
#366 opened Jan 29, 2024 by d33bs
2
Add retry capabilities for kg2_util.download_file_if_not_exist_locally to avoid systemic failures
#365 opened Jan 29, 2024 by d33bs
2
Remove DOID subclass_of edges during ingestion of DOID caution tricky Erica-look high priority
#364 opened Jan 24, 2024 by saramsey
2
Look into PathWhiz scripts to make sure there are proper links back to SMPDB pathways
#363 opened Jan 24, 2024 by saramsey
Bazillion Cardiolipin Biosynthesis pathways canonicalization Has to do with our canonicalization/entity resolution work sar-look Marks an issue that Steve needs to examine
#361 opened Jan 19, 2024 by dkoslicki
1
Error in Ontologies_Conversion
#360 opened Jan 17, 2024 by acevedol
5
biolink-model 4.0.0 will move the location of the biolink-model.owl.ttl file into a subdirectory and will have a name change (dashes to underscores)
#355 opened Nov 29, 2023 by sierra-moxon
Consider ETLing WikiPathways and SIDER enhancement New feature or request
#347 opened Sep 6, 2023 by ecwood
1
ProTip! Follow long discussions with comments:>50.