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A list of examples for improving NodeSynonymizer #1252
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some more examples for @edeutsch - here are the 16 nodes in KG2.5.1c that have both
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chunyuma
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Feb 11, 2021
…e new NodeSynonymizer fixing the error #1252
I checked some of them and this problem seems to be fixed in the latest version of kg2c now. |
Awesome, closing then. |
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Hi @edeutsch, here are several examples for you to improve the NodeSynonymizer:
biolink:Disease
/biolink:PhenotypicFeature
/biolink:DiseaseOrPhenotypicFeature
but theall_categories
attribute has these categories. Some of them should not belong to one ofbiolink:Disease
/biolink:PhenotypicFeature
/biolink:DiseaseOrPhenotypicFeature
. These nodes can be queried by using DSL command:match (n) where ((n.category<>'biolink:Disease' and n.category<>'biolink:PhenotypicFeature' and n.category<>'biolink:DiseaseOrPhenotypicFeature') and ('biolink:Disease' in n.all_categories or 'biolink:PhenotypicFeature' in n.all_categories or 'biolink:DiseaseOrPhenotypicFeature' in n.all_categories)) return n.id, n.category, n.all_categories limit 25
. I list a few of them below for reference:biolink:Drug
/biolink:ChemicalSubstance
but theall_categories
attribute has these categories. These nodes can be queried by using DSL command:match (n) where ((n.category<>'biolink:Drug' and n.category<>'biolink:ChemicalSubstance') and ('biolink:Drug' in n.all_categories or 'biolink:ChemicalSubstance' in n.all_categories)) return n.id, n.category, n.all_categories limit 25
. I list a few of them below for reference:biolink:Disease
/biolink:PhenotypicFeature
/biolink:DiseaseOrPhenotypicFeature
andbiolink:Drug
/biolink:ChemicalSubstance
. These nodes can be queried by using DSL command:match (n) where (('biolink:Disease' in n.all_categories or 'biolink:PhenotypicFeature' in n.all_categories or 'biolink:DiseaseOrPhenotypicFeature' in n.all_categories) and ('biolink:Drug' in n.all_categories or 'biolink:ChemicalSubstance' in n.all_categories)) return n.id, n.category, n.all_categories limit 25
. I list a few of them below for reference:The text was updated successfully, but these errors were encountered: