Merge pull request #3 from SBU-BMI/develop

Fixed import
SBU-BMI · Sep 26, 2019 · f0b52af · f0b52af
2 parents 5150d86 + b69587e
commit f0b52af
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/uploadHeatmaps.sh b/uploadHeatmaps.sh
@@ -235,12 +235,13 @@ exitStatus=$?
 # Check to see conversion process succeeded.
 if [[ $exitStatus -eq 0 ]]
 then
+  uploadDir="/mnt/data/heatmaps/${out}"
   # Import into the quip database
-  for filename in ${out}/*.json ; do
+  for filename in ${uploadDir}/*.json ; do
     mongoimport --port ${port} --host ${host} -d ${database} -c heatmap ${filename}
   done
 else
-  rm -f ${out}/*
+  rm -f ${uploadDir}/*
   exit $exitStatus
 fi