Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

TST: run tests in docker image + fix setup.cfg regression #61

Merged
merged 8 commits into from
Jan 9, 2023

Conversation

kaczmarj
Copy link
Member

@kaczmarj kaczmarj commented Jan 9, 2023

Adds a 'test-docker' step to CI. And fixes the path to package_data in setup.cfg.

During the creation of this PR I discovered that the 0.3.2 release wheel will not work because the tcga.csv file is not present (because package_data was not changed when I made patchlib into _patchlib). So after this PR is merged, we should release a new version and remove 0.3.2 from pypi. but the docker images work fine, so we can leave those alone. i added the 'test-package' job in ci to catch regressions in the python package. running wsinfer from a different directory (and from a non-editable install) triggered the error.

@kaczmarj kaczmarj linked an issue Jan 9, 2023 that may be closed by this pull request
@kaczmarj kaczmarj merged commit 25da8fe into main Jan 9, 2023
@kaczmarj kaczmarj deleted the tst/pytest-in-docker branch January 9, 2023 21:04
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

CI: add tests on docker image
1 participant