Multi-band raster (#40)

* correct version number * add missing test data * update scheme * move old files to old * update scheme * add exceptions to detect file not found error * refactor * move cluster to dataset * add test data * add fast to test categories * generate missing lines in testing * update example * add read_file documentations * add example data * add documentations for Dataset attributes * time_stamp attribute returns None if there is no time_stamp * add dataset attribute image * update scheme * update dataset attributes * add bounds image * update overall docs structure * add scheme images * bump up cleopatra version * change the comparison of the geotrsndform to use the pivot point and cell size * refactor _crop_aligned * encapsulate the _check_no_data_value * make change_no_data_value use the _set_no_data_value * add test to check if the no_data_value does not comply with the band data type * add setter for the no_data_value * test no_data_value setter * crop multi bands * add missing test data * add missing test data * use back slash * use back slash * add debug statment * add debug statment * refactor * update test data * clean test and examples files * change name * remove tif file as git does not detect changes in tif files * reupload tif file as git does not detect changes in tif files * Delete sentinel_crop.tif * replace the crop tif file * adjust resample for multi bands rasters * add test data * adjust align to work with multi band rasters * add test data * extract function works with multiband rasters * bump up hpc and cleopatara * change utils, io, and errors to private modules * add get driver by extension * add get_driver_by_extension function * remove driver from Dataset.to_file function * refactor * overlay works with multi band rasters * to_crs works with multi band rasters * return array with the same type as the raster band * plot rgb * plot rgb example * fix error in using TkAgg in the test file * update check list files * update readme file
Serapieum-of-alex · Apr 23, 2023 · e43ae74 · e43ae74
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diff --git a/.github/workflows/ubuntu.yml b/.github/workflows/ubuntu.yml
@@ -1,4 +1,4 @@
-name: Main-package
+wname: Main-package
 on:
     push:
         branches:
@@ -42,7 +42,7 @@ jobs:
 
       - name: Generate coverage report
         run: |
-          python -m pytest -m "not plot"
+          python -m pytest -sv -m "not plot"
 
       - name: Upload coverage reports to Codecov with GitHub Action
         uses: codecov/codecov-action@v3
diff --git a/.gitignore b/.gitignore
@@ -159,3 +159,4 @@ examples/coords.csv
 *.pptx
 examples/monthly_precipitation_amount_1hour_Accumulation_2022.05.01.00.00.00.tif
 tests/data/raster-folder-coello/*
+examples/old/*
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -108,7 +108,7 @@ repos:
     hooks:
       - id: pytest-check
         name: pytest-check
-        entry: pytest -vvv --cov=pyramids
+        entry: pytest -v --cov=pyramids --cov-report term-missing
         language: system
         pass_filenames: false
         always_run: true
diff --git a/HISTORY.rst b/HISTORY.rst
@@ -62,3 +62,13 @@ History
 * Add dunder methods for all classes.
 * add plotting functionality and cleopatra (plotting package) as an optional package.
 * remove loops and replace it with ufunc from numpy.
+
+0.4.1 (2023-04-23)
+------------------
+* adjust all spatial operation functions to work with multi-band rasters.
+* use gdal exceptions to capture runtime error of not finding the the file.
+* add cluster method to dataset class.
+* time_stamp attribute returns None if there is no time_stamp.
+* restructure the no_data_value related functions.
+* plot function can plot rgb imagr for multi-band rasters.
+* to_file detect the driver type from the extension in the path.
diff --git a/README.md b/README.md
@@ -13,7 +13,7 @@
 [![Codacy Badge](https://app.codacy.com/project/badge/Grade/5e3aa4d0acc843d1a91caf33545ecf03)](https://www.codacy.com/gh/Serapieum-of-alex/pyramids/dashboard?utm_source=github.com&amp;utm_medium=referral&amp;utm_content=Serapieum-of-alex/pyramids&amp;utm_campaign=Badge_Grade)
 
 
-![GitHub commits since latest release (by SemVer including pre-releases)](https://img.shields.io/github/commits-since/mafarrag/pyramids/0.2.1?include_prereleases&style=plastic)
+![GitHub commits since latest release (by SemVer including pre-releases)](https://img.shields.io/github/commits-since/mafarrag/pyramids/0.4.1?include_prereleases&style=plastic)
 ![GitHub last commit](https://img.shields.io/github/last-commit/mafarrag/pyramids)
 
 Current release info
@@ -25,7 +25,7 @@ Current release info
 
 pyramids - GIS utility package
 =====================================================================
-**pyramids** is a GIS utility package using gdal, rasterio, ....
+**pyramids** is a GIS utility package using gdal, ....
 
 pyramids
 
@@ -48,7 +48,7 @@ Installing pyramids
 Installing `pyramids` from the `conda-forge` channel can be achieved by:
 
 ```
-conda install -c conda-forge pyramids=0.4.0
+conda install -c conda-forge pyramids=0.4.1
 ```
 
 It is possible to list all of the versions of `pyramids` available on your platform with:
@@ -66,7 +66,7 @@ pip install git+https://github.com/Serapieum-of-alex/pyramids
 ## pip
 to install the last release you can easly use pip
 ```
-pip install pyramids-gis==0.4.0
+pip install pyramids-gis==0.4.1
 ```
 
 Quick start