R for data science: a book

A novel genome assembly pipeline based on deep learning

WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes

Public Repo for the Seqrutinator tool and its python dependencias

Geometric deep learning of protein–DNA binding specificity

Open-source foundation of the user-sponsored PyMOL molecular visualization system.

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

Parallel/Homoplasic SNP Finder

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

A minimap2 frontend for PacBio native data formats

Detecting DNA methylation from PacBio CCS reads

Hi-C data processing pipeline

A collection of tools for Hi-C data analysis

好的CADD教程，资源总结

A program to call variants from genome alignment

Official home of genome aligner based upon notion of Cactus graphs

Make colorful identity heatmaps of genomic sequence

Federating genomes with love (and synteny derived from functional annotations)

Fast genome-wide functional annotation through orthology assignment

Version 5 of the CAFE phylogenetics software

📖 Markdown·简单的世界

FacTool: Factuality Detection in Generative AI

A PyMOL Plugin for calculating docking box for LeDock, AutoDock and AutoDock Vina.

Transcript assembly and quantification for RNA-Seq

A step-by-step tutorial for Weighted correlation network analysis (WGCNA)

Repository for R package with an implementation of PCIT and RIF algorthms.

This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MACSE. These pipelines are mostly bash scripts encapsulated wi…

Automatically exported from code.google.com/p/prank-msa

EasyCodeML: A visual tool for analysis of selection using CodeML