Move stringi import to before GenomicFeatures import

XPRESSyourself · Mar 30, 2020 · 1fc9a93 · 1fc9a93
1 parent b4e3e18
commit 1fc9a93
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/xpresspipe/RbuildIndex.r b/xpresspipe/RbuildIndex.r
@@ -54,6 +54,9 @@ sub_license <- function() {
 # Install dependencies
 if (!requireNamespace("BiocManager", quietly = TRUE)) {install.packages("BiocManager", repos = "http://cran.us.r-project.org")}
 
+install.packages("stringi", repos = "http://cran.us.r-project.org")
+library(stringi)
+
 if ("GenomicFeatures" %in% rownames(installed.packages()) == FALSE) {
   print("Installing GenomicFeatures...")
   BiocManager::install("GenomicFeatures", dependencies=c("Depends", "Imports", "LinkingTo"))
@@ -63,9 +66,6 @@ if ("GenomicFeatures" %in% rownames(installed.packages()) == FALSE) {
 
 library(GenomicFeatures)
 
-install.packages("stringi", repos = "http://cran.us.r-project.org")
-library(stringi)
-
 if ("data.table" %in% rownames(installed.packages()) == FALSE) {
   print("Installing data.table...")
   install.packages("data.table", repos = "http://cran.us.r-project.org")