Updates from the last release:
A new feature to plot genes in UCSC genome browser format within the visualized area.
parameters:
-g (--plotGenes): a sorted bed file with gene names should be provided.
-gl (--geneLabels): a boolean to make gene names visible (default) or not.
new parameters:
-ce (--compareEx): comma separated two absolute values (such as for -4 to 6: 4,6).
-p (--pair): for plotting all pair-wise matrix comparisons.
-dpi (--dPixels): to determine dots per inch for the output file, higher values for higher resolution (default:200).