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Add delta IC to not valid relationship reports (hubmapconsortium#207)
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* generic uberon location report

* generate thymus report

* add deltaIC to relationship logs

* add deltaIC column in relationships log

* update docs folder

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Co-authored-by: Anita Caron <anitacaron@users.noreply.github.com>
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Anita Caron and anitacaron authored Jan 31, 2023
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2 changes: 1 addition & 1 deletion docs/Blood/README.md
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ASCT+B Validation Reports for Blood (2023-01-24)
ASCT+B Validation Reports for Blood (2023-01-25)
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Table of contents
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68 changes: 34 additions & 34 deletions docs/Blood/class_Blood_log.tsv
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row_number s slabel user_slabel o olabel user_olabel
25 CL:0000767 basophil basophil UBERON:0000178 Blood Blood
24 CL:0000771 eosinophil eosinophil UBERON:0000178 Blood Blood
23 CL:0000775 neutrophil neutrophil UBERON:0000178 Blood Blood
23 CL:0000775 neutrophil neutrophil CL:0000775 neutrophil neutrophilic granulocyte
13 CL:0000787 memory B cell memory B cell UBERON:0000178 Blood Blood
14 CL:0000788 naive B cell naive B cell UBERON:0000178 Blood Blood
37 CL:0000815 regulatory T cell T regulatory UBERON:0000178 Blood Blood
12 CL:0000816 immature B cell immature B cell UBERON:0000178 Blood Blood
15 CL:0000818 transitional stage B cell transitional B cell UBERON:0000178 Blood Blood
36 CL:0000824 mature natural killer cell mature Natural killer CL:0000814 mature NK T cell NK lymphocytes
36 CL:0000824 mature natural killer cell mature Natural killer UBERON:0000178 Blood Blood
20 CL:0000840 immature conventional dendritic cell transitional Dendritic Cell (tDC) CL:0001056 dendritic cell, human dendritic cell (DC)
20 CL:0000840 immature conventional dendritic cell transitional Dendritic Cell (tDC) UBERON:0000178 Blood Blood
26 CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell CD4 naive UBERON:0000178 Blood Blood
27 CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory UBERON:0000178 Blood Blood
28 CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory UBERON:0000178 Blood Blood
31 CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory UBERON:0000178 Blood Blood
30 CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell CD8 naive UBERON:0000178 Blood Blood
35 CL:0000938 CD16-negative, CD56-bright natural killer cell, human CD56 bright Natural killer UBERON:0000178 Blood Blood
35 CL:0000938 CD16-negative, CD56-bright natural killer cell, human CD56 bright Natural killer CL:0000814 mature NK T cell NK lymphocytes
32 CL:0001050 effector CD8-positive, alpha-beta T cell CD8 T cell effector memory UBERON:0000178 Blood Blood
21 CL:0001054 CD14-positive monocyte CD14 monocyte UBERON:0000178 Blood Blood
19 CL:0001058 plasmacytoid dendritic cell, human Plasmacytoid Dendritic Cell (pDC) UBERON:0000178 Blood Blood
33 CL:0001062 effector memory CD8-positive, alpha-beta T cell, terminally differentiated CD8 T cell effector memory CD45RA UBERON:0000178 Blood Blood
29 CL:0001087 effector memory CD4-positive, alpha-beta T cell, terminally differentiated CD4 T cell effector memory CD45RA UBERON:0000178 Blood Blood
16 CL:0002394 CD141-positive myeloid dendritic cell dendritic cell type 1 (DC1) UBERON:0000178 Blood Blood
16 CL:0002394 CD141-positive myeloid dendritic cell dendritic cell type 1 (DC1) CL:0001056 dendritic cell, human dendritic cell (DC)
22 CL:0002396 CD14-low, CD16-positive monocyte CD16 monocyte UBERON:0000178 Blood Blood
17 CL:0002399 CD1c-positive myeloid dendritic cell dendritic cell type 2 (DC2) CL:0001056 dendritic cell, human dendritic cell (DC)
18 CL:0002399 CD1c-positive myeloid dendritic cell dendritic cell type 3 (DC3) UBERON:0000178 Blood Blood
18 CL:0002399 CD1c-positive myeloid dendritic cell dendritic cell type 3 (DC3) CL:0001056 dendritic cell, human dendritic cell (DC)
17 CL:0002399 CD1c-positive myeloid dendritic cell dendritic cell type 2 (DC2) UBERON:0000178 Blood Blood
34 CL:0002437 mature CD8 single-positive thymocyte mature CD8 T cell UBERON:0000178 Blood Blood
row_number s slabel user_slabel o olabel user_olabel deltaIC
20 CL:0000840 immature conventional dendritic cell transitional Dendritic Cell (tDC) CL:0001056 dendritic cell, human dendritic cell (DC) 13.202680894068223
12 CL:0000816 immature B cell immature B cell UBERON:0000178 Blood Blood
13 CL:0000787 memory B cell memory B cell UBERON:0000178 Blood Blood
14 CL:0000788 naive B cell naive B cell UBERON:0000178 Blood Blood
15 CL:0000818 transitional stage B cell transitional B cell UBERON:0000178 Blood Blood
16 CL:0002394 CD141-positive myeloid dendritic cell dendritic cell type 1 (DC1) CL:0001056 dendritic cell, human dendritic cell (DC)
16 CL:0002394 CD141-positive myeloid dendritic cell dendritic cell type 1 (DC1) UBERON:0000178 Blood Blood
17 CL:0002399 CD1c-positive myeloid dendritic cell dendritic cell type 2 (DC2) CL:0001056 dendritic cell, human dendritic cell (DC)
17 CL:0002399 CD1c-positive myeloid dendritic cell dendritic cell type 2 (DC2) UBERON:0000178 Blood Blood
18 CL:0002399 CD1c-positive myeloid dendritic cell dendritic cell type 3 (DC3) CL:0001056 dendritic cell, human dendritic cell (DC)
18 CL:0002399 CD1c-positive myeloid dendritic cell dendritic cell type 3 (DC3) UBERON:0000178 Blood Blood
19 CL:0001058 plasmacytoid dendritic cell, human Plasmacytoid Dendritic Cell (pDC) UBERON:0000178 Blood Blood
20 CL:0000840 immature conventional dendritic cell transitional Dendritic Cell (tDC) UBERON:0000178 Blood Blood
21 CL:0001054 CD14-positive monocyte CD14 monocyte UBERON:0000178 Blood Blood
22 CL:0002396 CD14-low, CD16-positive monocyte CD16 monocyte UBERON:0000178 Blood Blood
23 CL:0000775 neutrophil neutrophil CL:0000775 neutrophil neutrophilic granulocyte
23 CL:0000775 neutrophil neutrophil UBERON:0000178 Blood Blood
24 CL:0000771 eosinophil eosinophil UBERON:0000178 Blood Blood
25 CL:0000767 basophil basophil UBERON:0000178 Blood Blood
26 CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell CD4 naive UBERON:0000178 Blood Blood
27 CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory UBERON:0000178 Blood Blood
28 CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory UBERON:0000178 Blood Blood
29 CL:0001087 effector memory CD4-positive, alpha-beta T cell, terminally differentiated CD4 T cell effector memory CD45RA UBERON:0000178 Blood Blood
30 CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell CD8 naive UBERON:0000178 Blood Blood
31 CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory UBERON:0000178 Blood Blood
32 CL:0001050 effector CD8-positive, alpha-beta T cell CD8 T cell effector memory UBERON:0000178 Blood Blood
33 CL:0001062 effector memory CD8-positive, alpha-beta T cell, terminally differentiated CD8 T cell effector memory CD45RA UBERON:0000178 Blood Blood
34 CL:0002437 mature CD8 single-positive thymocyte mature CD8 T cell UBERON:0000178 Blood Blood
35 CL:0000938 CD16-negative, CD56-bright natural killer cell, human CD56 bright Natural killer CL:0000814 mature NK T cell NK lymphocytes
35 CL:0000938 CD16-negative, CD56-bright natural killer cell, human CD56 bright Natural killer UBERON:0000178 Blood Blood
36 CL:0000824 mature natural killer cell mature Natural killer CL:0000814 mature NK T cell NK lymphocytes
36 CL:0000824 mature natural killer cell mature Natural killer UBERON:0000178 Blood Blood
37 CL:0000815 regulatory T cell T regulatory UBERON:0000178 Blood Blood
2 changes: 1 addition & 1 deletion docs/Blood_vasculature/README.md
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ASCT+B Validation Reports for Blood_vasculature (2023-01-24)
ASCT+B Validation Reports for Blood_vasculature (2023-01-25)
============================================================

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